Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMQ62_RS07630 Genome accession   NZ_CP135065
Coordinates   1573556..1574290 (+) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain ID24665     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568556..1579290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS07605 (RMQ62_07605) tsaE 1570156..1570596 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RMQ62_RS07610 (RMQ62_07610) - 1570589..1571116 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  RMQ62_RS07615 (RMQ62_07615) - 1571113..1572306 (+) 1194 WP_313681177.1 LCP family protein -
  RMQ62_RS07620 (RMQ62_07620) - 1572776..1573078 (-) 303 WP_024383569.1 hypothetical protein -
  RMQ62_RS07625 (RMQ62_07625) - 1573080..1573493 (-) 414 WP_105134828.1 HIT family protein -
  RMQ62_RS07630 (RMQ62_07630) pptA 1573556..1574290 (+) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  RMQ62_RS07635 (RMQ62_07635) - 1574287..1575327 (+) 1041 WP_313681173.1 ABC transporter permease -
  RMQ62_RS07640 (RMQ62_07640) ccrZ 1575377..1576171 (+) 795 WP_313681172.1 cell cycle regulator CcrZ -
  RMQ62_RS07645 (RMQ62_07645) trmB 1576168..1576806 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMQ62_RS07650 (RMQ62_07650) rimP 1577064..1577534 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  RMQ62_RS07655 (RMQ62_07655) nusA 1577608..1578750 (+) 1143 WP_167786679.1 transcription termination factor NusA -
  RMQ62_RS07660 (RMQ62_07660) rnpM 1578767..1579063 (+) 297 WP_002942375.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=884741 RMQ62_RS07630 WP_002942356.1 1573556..1574290(+) (pptA) [Streptococcus suis strain ID24665]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=884741 RMQ62_RS07630 WP_002942356.1 1573556..1574290(+) (pptA) [Streptococcus suis strain ID24665]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAACTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGTGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721