Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RMQ62_RS07570 Genome accession   NZ_CP135065
Coordinates   1561918..1563708 (+) Length   596 a.a.
NCBI ID   WP_024408317.1    Uniprot ID   A0A123TYL2
Organism   Streptococcus suis strain ID24665     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556918..1568708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS07555 (RMQ62_07555) sufU 1557988..1558428 (+) 441 WP_222759335.1 Fe-S cluster assembly sulfur transfer protein SufU -
  RMQ62_RS07560 (RMQ62_07560) sufB 1558572..1559987 (+) 1416 WP_313741765.1 Fe-S cluster assembly protein SufB -
  RMQ62_RS07565 (RMQ62_07565) pbp3 1560464..1561705 (-) 1242 WP_074413939.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RMQ62_RS07570 (RMQ62_07570) oppA 1561918..1563708 (+) 1791 WP_024408317.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RMQ62_RS07575 (RMQ62_07575) - 1564085..1565083 (+) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  RMQ62_RS07580 (RMQ62_07580) - 1565086..1566027 (+) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  RMQ62_RS07585 (RMQ62_07585) opp4B 1566029..1566985 (+) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  RMQ62_RS07590 (RMQ62_07590) - 1566999..1567901 (+) 903 WP_029171026.1 ABC transporter permease -
  RMQ62_RS07595 (RMQ62_07595) - 1568023..1568388 (+) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65678.45 Da        Isoelectric Point: 4.4616

>NTDB_id=884740 RMQ62_RS07570 WP_024408317.1 1561918..1563708(+) (oppA) [Streptococcus suis strain ID24665]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVESKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEHFFKGTTPKASSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDDSAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=884740 RMQ62_RS07570 WP_024408317.1 1561918..1563708(+) (oppA) [Streptococcus suis strain ID24665]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAGT
TGAAATATGCGTTTGTATCAGCAACTACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAAGTAAGAAAATCACAGTTAGCTTGACCGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGACGGTAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTTCCAAACGAACACTTCTTCAAGGGGACAACACCAAAAGCAAG
TTCATTGAAGATTGACATCGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAATTATGACATCGCAGATATGC
CAGTTGACCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGACTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCCAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ACGTTGAGCTTTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATTGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGGAAGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCATGAGCAAGCATTTGCTATTCCTACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TYL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.953

100

0.93