Detailed information NTG0884737

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RMQ62_RS06885
• Genome accession: NZ_CP135065
• Coordinates: 1405211..1407661 (+)
• Length: 816 a.a.
• NCBI ID: WP_313681234.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID24665
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1400211..1412661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ62_RS06860 (RMQ62_06860)	rpsB	1401051..1401827 (+)	777	WP_012775356.1	30S ribosomal protein S2	-
RMQ62_RS06865 (RMQ62_06865)	tsf	1401983..1403023 (+)	1041	WP_014638702.1	translation elongation factor Ts	-
RMQ62_RS06870 (RMQ62_06870)	-	1403516..1404142 (-)	627	WP_222759414.1	GNAT family acetyltransferase	-
RMQ62_RS06875 (RMQ62_06875)	-	1404142..1404480 (-)	339	WP_105211701.1	thioredoxin domain-containing protein	-
RMQ62_RS06880 (RMQ62_06880)	-	1404749..1405207 (+)	459	WP_002937810.1	CtsR family transcriptional regulator	-
RMQ62_RS06885 (RMQ62_06885)	clpC	1405211..1407661 (+)	2451	WP_313681234.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RMQ62_RS06890 (RMQ62_06890)	-	1407670..1408167 (+)	498	WP_202822152.1	GNAT family N-acetyltransferase	-
RMQ62_RS06895 (RMQ62_06895)	-	1408479..1408967 (+)	489	WP_222759411.1	adenylyltransferase/cytidyltransferase family protein	-
RMQ62_RS06900 (RMQ62_06900)	dusB	1409071..1410075 (-)	1005	WP_105152945.1	tRNA dihydrouridine synthase DusB	-
RMQ62_RS06905 (RMQ62_06905)	hslO	1410068..1410934 (-)	867	WP_024407276.1	Hsp33 family molecular chaperone HslO	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90492.03 Da
• Isoelectric Point: 6.1698

>NTDB_id=884737 RMQ62_RS06885 WP_313681234.1 1405211..1407661(+) (clpC) [Streptococcus suis strain ID24665]
MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAGAVLAEYPISISDYEHATFVVTDKVYREELDSFRILP
SSKRLDETASFAKKIAEVVKAKELGTEHLFMAMLLDKRSTASQILDKVGFYFEDSDDKFRFLDLRKNLEARAGFTKEDLK
AIRSVMKGGKAKPTNMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIARMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDTAV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQVEETGLTSIDKALMDKKYKTVSKLLIKTKEDAEASQNYDLEV
TEEDVLETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVF
HSLTETHMQDVVKVMIKPLLAVTAEKGINLKLQPSALKLLAKQGYDLEMGARPLRRLLQTKLEDPLAEMLLRGELSAGST
LKVGVKGEELKFDVVK

Nucleotide

• Length: 2451 bp

>NTDB_id=884737 RMQ62_RS06885 WP_313681234.1 1405211..1407661(+) (clpC) [Streptococcus suis strain ID24665]
ATGAAAATTTCAACTGGTTTACAACGGGTTTTTGAAGATGCCCAGTTAGTGGCCCAACGTTATGCCTGTGATTACTTGGA
AACCTGGCATGTGCTCTTGTCTTTCGTTATCAACCATGATACAGTCGCCGGCGCTGTTTTGGCAGAATATCCTATTTCAA
TTTCTGACTATGAACATGCAACTTTTGTTGTGACCGACAAGGTCTATCGTGAAGAGTTGGATAGTTTTCGTATTTTACCA
TCTTCTAAACGTTTGGATGAAACGGCTAGTTTTGCCAAGAAAATTGCAGAAGTCGTCAAGGCTAAGGAGCTGGGAACAGA
GCATTTGTTTATGGCTATGTTGTTGGACAAGCGGTCAACGGCTAGTCAGATTTTGGACAAGGTAGGTTTTTATTTTGAAG
ACTCAGATGATAAGTTTCGTTTTTTGGACTTGCGTAAAAACTTGGAGGCACGTGCGGGATTTACCAAAGAGGACCTTAAA
GCTATCCGCAGTGTGATGAAGGGTGGTAAAGCCAAACCTACTAATATGGGACAGATGATGGGAATGCCCCCAGCACCTCA
AAGTGGTGGATTAGAAGACTACACTCGTGATTTGACAGCTTTGGCGCGTGAAGGGAAGATTGAACCTGTCATCGGTCGAG
ACGCTGAGATTGCACGGATGATCCAAATTCTATCACGTAAAACCAAGAACAACCCAGTTCTAGTTGGTGATGCTGGTGTC
GGAAAAACTGCACTTGCTTTGGGTCTTGCTCAACGTGTTGCTGCAGGTGATGTCCCTGTCAGCTTGGCTAAGATGCGGGT
TTTGGAACTTGACTTAATGAACGTTATCGCTGGAACTCGTTTCCGTGGTGATTTCGAAGAGCGGATGAATAATATCATCA
ACGACATCGAGGAAGATGGTCAGGTCATCCTCTTCATCGATGAGTTGCATACCATTATGGGTTCAGGGTCAGGGATTGAT
TCGACCTTGGATGCAGCCAATATCCTCAAACCAGCTCTTGCTCGTGGCACCCTCCGTACGGTCGGAGCGACAACTCAGAC
AGAGTATCAAAAGCATATTGAGAAAGACGCAGCCCTGGTTCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTGG
AAGATAGCATTGCCATTTTGACTGGTTTAAAAGGTACTTTTGAGAAATACCACAGGGTCCGTATTGGAGATACTGCTGTT
GAAACTGCTGTGACCTACGCTAAGCGGTATTTGACCAGTAAAAACCTGCCAGATTCTGCCATTGATCTGCTGGATGAAGC
CAGTGCAACGGTACAAAATCGAGTGAAAGGGCAGGTTGAGGAAACAGGACTGACGAGTATTGACAAGGCCTTGATGGATA
AAAAATATAAGACTGTCAGCAAGCTTTTGATTAAAACGAAAGAAGATGCCGAGGCTAGTCAAAACTATGACCTTGAAGTA
ACAGAAGAAGATGTTTTAGAAACACTTAGCCGCTTGTCAGGTATTCCTGTAGCCAAGCTCAGTCAGTCAGATACCAAGAA
ATATCTGAATTTGGAAGCAGAACTGCATAAACGTGTCATCGGTCAAGAAGAAGCTATTTCTGCAGTTAGCAGAGCTATTC
GCCGTAATCAGTCAGGGATTCGTACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTGGGGCCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGACGAATCTGCTCTTATCCGTTTTGATATGTCTGAATACAT
GGAGAAATTCGCAGCCAGTCGTCTCAATGGAGCGCCTCCGGGCTACGTGGGCTATGAGGAAGGTGGCGAATTGACAGAAA
AAGTTCGTAACAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTTTTG
CAGGTCTTGGATGATGGTGTTCTGACAGACAGTAAGGGACGTAAGGTTGATTTCTCAAATACCATTATTATCATGACGTC
AAACCTTGGAGCAACAGCCCTTCGTGATGATAAGACAGTTGGTTTTGGTGCCCTTGATTTATCTAAGGACCACAAGGAAG
TGGAGAAACGCATTTTTGAGGAATTGAAAAAAGCCTATCGTCCAGAATTTATCAACCGTATTGACGAGAAAGTTGTCTTC
CATAGCCTAACGGAAACTCATATGCAGGATGTTGTCAAGGTCATGATTAAACCTTTGTTGGCTGTAACAGCTGAGAAAGG
AATTAACCTTAAACTGCAACCGTCAGCCCTCAAGTTATTGGCTAAACAAGGTTACGACCTAGAAATGGGGGCTCGTCCTC
TTCGTAGACTCTTACAGACCAAATTGGAAGACCCATTGGCAGAAATGTTGCTCCGTGGTGAGTTGTCTGCTGGTTCGACC
TTGAAGGTTGGGGTAAAGGGCGAAGAGCTCAAGTTTGATGTGGTCAAATAG

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

• AAA lid domain (AAA_lid_9) (372-455)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-803)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (102-130)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	71.779	99.877	0.717
clpC	Streptococcus pneumoniae D39	71.779	99.877	0.717
clpC	Streptococcus pneumoniae Rx1	71.779	99.877	0.717
clpC	Streptococcus mutans UA159	66.462	99.755	0.663
clpC	Streptococcus thermophilus LMG 18311	64.26	100	0.654
clpC	Streptococcus thermophilus LMD-9	64.26	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.461	100	0.506
clpC	Bacillus subtilis subsp. subtilis str. 168	43.593	100	0.446