Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RMQ62_RS06570 Genome accession   NZ_CP135065
Coordinates   1337692..1339059 (+) Length   455 a.a.
NCBI ID   WP_024404944.1    Uniprot ID   A0A4T2GZR1
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1337152..1351085 1337692..1339059 within 0


Gene organization within MGE regions


Location: 1337152..1351085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS06565 (RMQ62_06565) - 1337152..1337685 (+) 534 WP_167786632.1 histidine phosphatase family protein -
  RMQ62_RS06570 (RMQ62_06570) radA 1337692..1339059 (+) 1368 WP_024404944.1 DNA repair protein RadA Machinery gene
  RMQ62_RS06575 (RMQ62_06575) - 1339183..1339677 (+) 495 WP_014638738.1 carbonic anhydrase -
  RMQ62_RS06580 (RMQ62_06580) - 1339884..1340642 (+) 759 WP_013730631.1 TIGR00266 family protein -
  RMQ62_RS06585 (RMQ62_06585) - 1340989..1342209 (+) 1221 WP_313681248.1 glycosyltransferase -
  RMQ62_RS06590 (RMQ62_06590) - 1342777..1343427 (+) 651 WP_313741741.1 KxYKxGKxW signal peptide domain-containing protein -
  RMQ62_RS10200 - 1344073..1348194 (+) 4122 Protein_1252 DUF445 family protein -
  RMQ62_RS06600 (RMQ62_06600) - 1348243..1348458 (+) 216 WP_313681245.1 LPXTG cell wall anchor domain-containing protein -
  RMQ62_RS06605 (RMQ62_06605) - 1348598..1349044 (+) 447 WP_024407334.1 LytTR family DNA-binding domain-containing protein -
  RMQ62_RS06610 (RMQ62_06610) - 1349049..1349714 (+) 666 WP_222759444.1 hypothetical protein -
  RMQ62_RS06615 (RMQ62_06615) - 1349805..1351085 (+) 1281 WP_313681244.1 MFS transporter -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49871.38 Da        Isoelectric Point: 6.1911

>NTDB_id=884736 RMQ62_RS06570 WP_024404944.1 1337692..1339059(+) (radA) [Streptococcus suis strain ID24665]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=884736 RMQ62_RS06570 WP_024404944.1 1337692..1339059(+) (radA) [Streptococcus suis strain ID24665]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCACCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTAAAGAACGAGCGAGTCAGCCTGACAGGGG
AGAAAACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACAAATATGGAGGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGCAGTCTGGTCCTGATCGGTGGCGATCCGGGGATTGGAAAATCCACCCTGCT
CTTACAGGTATCGACCCAGCTTTCGACCATTGGCACCGTCCTTTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTCTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACAATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACATTCATCGTCG
GCCACATGACCAAGGAAGGAACTCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCAG
CCATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAATCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGTGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCTACCAACCCGCAAGAGTGCTTTATTGGCGAAATCGGCCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4T2GZR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624