Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RMQ62_RS04650 Genome accession   NZ_CP135065
Coordinates   972409..973122 (-) Length   237 a.a.
NCBI ID   WP_044683691.1    Uniprot ID   A0A0Z8J6C0
Organism   Streptococcus suis strain ID24665     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 967409..978122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS04630 (RMQ62_04630) - 968144..968797 (-) 654 WP_105119323.1 GNAT family N-acetyltransferase -
  RMQ62_RS04635 (RMQ62_04635) - 968821..971154 (-) 2334 WP_254457645.1 endonuclease MutS2 -
  RMQ62_RS04640 (RMQ62_04640) - 971495..972043 (-) 549 WP_002935945.1 CvpA family protein -
  RMQ62_RS04645 (RMQ62_04645) - 972040..972351 (-) 312 WP_002935948.1 hypothetical protein -
  RMQ62_RS04650 (RMQ62_04650) treR 972409..973122 (-) 714 WP_044683691.1 trehalose operon repressor Regulator
  RMQ62_RS04655 (RMQ62_04655) treP 973355..975349 (+) 1995 WP_313741860.1 PTS system trehalose-specific EIIBC component -
  RMQ62_RS04660 (RMQ62_04660) treC 975631..977256 (+) 1626 WP_313741861.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27159.01 Da        Isoelectric Point: 6.7418

>NTDB_id=884717 RMQ62_RS04650 WP_044683691.1 972409..973122(-) (treR) [Streptococcus suis strain ID24665]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=884717 RMQ62_RS04650 WP_044683691.1 972409..973122(-) (treR) [Streptococcus suis strain ID24665]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTTGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTGGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAGTTCC
AATATACAGAAAGCAAGCATAAAATTGACAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8J6C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519