Detailed information NTG0884715

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RMQ62_RS03890
• Genome accession: NZ_CP135065
• Coordinates: 811901..814000 (-)
• Length: 699 a.a.
• NCBI ID: WP_238708721.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID24665
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 806901..819000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ62_RS03875 (RMQ62_03875)	-	807016..807723 (+)	708	WP_004194205.1	UTRA domain-containing protein	-
RMQ62_RS03880 (RMQ62_03880)	glgP	807953..810217 (-)	2265	WP_043025552.1	glycogen/starch/alpha-glucan family phosphorylase	-
RMQ62_RS03885 (RMQ62_03885)	malQ	810210..811718 (-)	1509	WP_011922661.1	4-alpha-glucanotransferase	-
RMQ62_RS03890 (RMQ62_03890)	clpC	811901..814000 (-)	2100	WP_238708721.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RMQ62_RS03895 (RMQ62_03895)	-	814560..815786 (-)	1227	WP_208498539.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
RMQ62_RS10190	-	816082..816594 (-)	513	WP_376786792.1	TipAS antibiotic-recognition domain-containing protein	-
RMQ62_RS10195	-	816715..816915 (-)	201	Protein_763	MerR family transcriptional regulator	-
RMQ62_RS03905 (RMQ62_03905)	-	816983..817144 (-)	162	Protein_764	ion channel	-
RMQ62_RS03910 (RMQ62_03910)	-	817192..817857 (-)	666	WP_105183782.1	endonuclease/exonuclease/phosphatase family protein	-
RMQ62_RS03915 (RMQ62_03915)	-	817860..818945 (-)	1086	WP_313680629.1	nucleotidyltransferase	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77264.08 Da
• Isoelectric Point: 4.8273

>NTDB_id=884715 RMQ62_RS03890 WP_238708721.1 811901..814000(-) (clpC) [Streptococcus suis strain ID24665]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAIYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTLV
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLGKEDLKAIVDLMLAQVNKTLSKKGIQLEVTEAAK
DFLMEEGYDQAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=884715 RMQ62_RS03890 WP_238708721.1 811901..814000(-) (clpC) [Streptococcus suis strain ID24665]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGATATTTTCAATCAACTTATGGGCAACATGGGTGGCTACAGCAC
AGAACGACGTCGCTATTCTATCAATGGGCGTGAAGTGACACCGGAGGAATTTGCCATTTACCGTCAGACTGGTCGCCTGC
CGCAGACAGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGATGGGATTCTTGCAAAACTTGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAATAAGGAAATCCAAGAAACATCTGAAATTTT
GGCACGTCGGACTAAGAATAATCCTGTTCTGGTCGGTGATGCGGGTGTTGGTAAAACTGCGGTAGTAGAAGGTTTGGCTC
AAGCCATTGTCAACGGAGATGTGCCAGCAGCCATTAAGAATAAGGAAATCATCTCCATCGATATTTCAGGCTTGGAAGCT
GGGACTCAGTACCGTGGAGCTTTTGAGGAAAATGTGCAGAATCTTGTCGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGCAGCACTGGTGGAGACTCAGGTTCCAAGGGCTTAGCGGATATTC
TCAAACCAGCTCTTTCCCGCGGAGAGCTAACTGTTATCGGTGCCACTACGCAGGACGAATACCGCAATACCATTCACAAG
AATGCTGCCTTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGATCTGATCGATGTGACCGCTGCTCACTTGGCTGCTCAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAGGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAGGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAGCAGAAAG
TGGTAGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTTTCACAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAAAATCGTCTAGCAGCTAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGACGGCAACCGCCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTTGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCG
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGTTATGTTGGTTATGATGACAATTCCCATAC
TCTTACCGAACGTGTCCGCCGCAATCCGTACTCCATTGTCCTCTTGGATGAAATTGAAAAAGCAGATCCACAAGTGATTA
CCCTCCTTCTGCAAGTGCTAGATGATGGTCATTTGACAGACGGACAGGGCAATCAAGTCAATTTCAAAAATACCCTTGTC
ATCGCGACTTCAAATGCTGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGTCCAGAATTCCTCAACCGTTTCAACGCAGTTATCGAATTCAAACACTTGGGCAAAGAAGACCTCAAGGCGA
TCGTAGATTTGATGTTAGCCCAGGTCAATAAGACTCTGTCTAAAAAAGGTATTCAGTTAGAAGTGACCGAGGCTGCCAAA
GACTTCTTGATGGAAGAAGGTTATGACCAGGCCATGGGAGCTCGTCCTCTGCGCCGTGTCATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA lid domain (AAA_lid_9) (257-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.801	100	0.482
clpE	Streptococcus pneumoniae Rx1	49.689	92.132	0.458
clpE	Streptococcus pneumoniae D39	49.689	92.132	0.458
clpE	Streptococcus pneumoniae R6	49.689	92.132	0.458
clpE	Streptococcus pneumoniae TIGR4	49.689	92.132	0.458
clpE	Streptococcus mutans UA159	49.298	91.702	0.452
clpC	Bacillus subtilis subsp. subtilis str. 168	45.201	92.418	0.418
clpC	Streptococcus pneumoniae Rx1	41.317	95.565	0.395
clpC	Streptococcus pneumoniae D39	41.317	95.565	0.395
clpC	Streptococcus pneumoniae TIGR4	41.229	95.422	0.393
clpC	Streptococcus mutans UA159	43.528	88.412	0.385
clpC	Streptococcus thermophilus LMD-9	42.72	89.413	0.382
clpC	Streptococcus thermophilus LMG 18311	42.56	89.413	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.834	88.841	0.381