Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RMQ63_RS06770 Genome accession   NZ_CP135063
Coordinates   1393853..1394566 (+) Length   237 a.a.
NCBI ID   WP_044683691.1    Uniprot ID   A0A0Z8J6C0
Organism   Streptococcus suis strain ID32563     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388853..1399566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS06760 (RMQ63_06760) treC 1389731..1391356 (-) 1626 WP_254457643.1 alpha,alpha-phosphotrehalase -
  RMQ63_RS06765 (RMQ63_06765) treP 1391638..1393620 (-) 1983 WP_254457644.1 PTS system trehalose-specific EIIBC component -
  RMQ63_RS06770 (RMQ63_06770) treR 1393853..1394566 (+) 714 WP_044683691.1 trehalose operon repressor Regulator
  RMQ63_RS06775 (RMQ63_06775) - 1394624..1394935 (+) 312 WP_002935948.1 hypothetical protein -
  RMQ63_RS06780 (RMQ63_06780) - 1394932..1395480 (+) 549 WP_002935945.1 CvpA family protein -
  RMQ63_RS06785 (RMQ63_06785) - 1395821..1398154 (+) 2334 WP_254457645.1 endonuclease MutS2 -
  RMQ63_RS06790 (RMQ63_06790) - 1398178..1398831 (+) 654 WP_105119323.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27159.01 Da        Isoelectric Point: 6.7418

>NTDB_id=884693 RMQ63_RS06770 WP_044683691.1 1393853..1394566(+) (treR) [Streptococcus suis strain ID32563]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=884693 RMQ63_RS06770 WP_044683691.1 1393853..1394566(+) (treR) [Streptococcus suis strain ID32563]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTTGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTGGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAGTTCC
AATATACAGAAAGCAAGCATAAAATTGACAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8J6C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519