Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RMQ63_RS05635 Genome accession   NZ_CP135063
Coordinates   1190614..1191378 (+) Length   254 a.a.
NCBI ID   WP_012775418.1    Uniprot ID   A0A0Z9LUD5
Organism   Streptococcus suis strain ID32563     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185614..1196378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS05620 (RMQ63_05620) - 1187997..1188680 (-) 684 WP_012775416.1 YoaK family protein -
  RMQ63_RS05625 (RMQ63_05625) rlmH 1188705..1189184 (-) 480 WP_023371894.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RMQ63_RS05630 (RMQ63_05630) htrA 1189357..1190553 (+) 1197 WP_313680545.1 trypsin-like peptidase domain-containing protein Regulator
  RMQ63_RS05635 (RMQ63_05635) spo0J 1190614..1191378 (+) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator
  RMQ63_RS05640 (RMQ63_05640) dnaA 1191581..1192954 (+) 1374 WP_024376047.1 chromosomal replication initiator protein DnaA -
  RMQ63_RS05645 (RMQ63_05645) dnaN 1193108..1194244 (+) 1137 WP_004194538.1 DNA polymerase III subunit beta -
  RMQ63_RS05650 (RMQ63_05650) - 1194336..1195217 (+) 882 WP_313680546.1 diacylglycerol kinase family protein -
  RMQ63_RS05655 (RMQ63_05655) - 1195227..1195430 (+) 204 WP_024379529.1 DUF951 domain-containing protein -
  RMQ63_RS05660 (RMQ63_05660) - 1195534..1195878 (+) 345 WP_313680547.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28966.25 Da        Isoelectric Point: 9.4760

>NTDB_id=884677 RMQ63_RS05635 WP_012775418.1 1190614..1191378(+) (spo0J) [Streptococcus suis strain ID32563]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=884677 RMQ63_RS05635 WP_012775418.1 1190614..1191378(+) (spo0J) [Streptococcus suis strain ID32563]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAGCACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9LUD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547