Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RMQ63_RS04900 Genome accession   NZ_CP135063
Coordinates   1037432..1038799 (-) Length   455 a.a.
NCBI ID   WP_024404944.1    Uniprot ID   A0A4T2GZR1
Organism   Streptococcus suis strain ID32563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1026800..1039789 1037432..1038799 within 0


Gene organization within MGE regions


Location: 1026800..1039789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS04860 (RMQ63_04860) - 1026800..1027465 (-) 666 WP_222759444.1 hypothetical protein -
  RMQ63_RS04865 (RMQ63_04865) - 1027470..1027916 (-) 447 WP_024407334.1 LytTR family DNA-binding domain-containing protein -
  RMQ63_RS04870 (RMQ63_04870) - 1028056..1028271 (-) 216 WP_313681245.1 LPXTG cell wall anchor domain-containing protein -
  RMQ63_RS10360 - 1029148..1032564 (-) 3417 Protein_969 DUF445 family protein -
  RMQ63_RS04880 (RMQ63_04880) - 1033063..1033620 (-) 558 WP_313681247.1 hypothetical protein -
  RMQ63_RS10365 - 1033633..1033713 (-) 81 Protein_971 KxYKxGKxW signal peptide domain-containing protein -
  RMQ63_RS04885 (RMQ63_04885) - 1034281..1035501 (-) 1221 WP_313681248.1 glycosyltransferase -
  RMQ63_RS04890 (RMQ63_04890) - 1035848..1036606 (-) 759 WP_013730631.1 TIGR00266 family protein -
  RMQ63_RS04895 (RMQ63_04895) - 1036814..1037308 (-) 495 WP_014638738.1 carbonic anhydrase -
  RMQ63_RS04900 (RMQ63_04900) radA 1037432..1038799 (-) 1368 WP_024404944.1 DNA repair protein RadA Machinery gene
  RMQ63_RS04905 (RMQ63_04905) - 1038806..1039339 (-) 534 WP_167786632.1 histidine phosphatase family protein -
  RMQ63_RS04910 (RMQ63_04910) - 1039346..1039789 (-) 444 WP_024388517.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49871.38 Da        Isoelectric Point: 6.1911

>NTDB_id=884674 RMQ63_RS04900 WP_024404944.1 1037432..1038799(-) (radA) [Streptococcus suis strain ID32563]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=884674 RMQ63_RS04900 WP_024404944.1 1037432..1038799(-) (radA) [Streptococcus suis strain ID32563]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCACCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTAAAGAACGAGCGAGTCAGCCTGACAGGGG
AGAAAACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACAAATATGGAGGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGCAGTCTGGTCCTGATCGGTGGCGATCCGGGGATTGGAAAATCCACCCTGCT
CTTACAGGTATCGACCCAGCTTTCGACCATTGGCACCGTCCTTTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTCTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACAATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACATTCATCGTCG
GCCACATGACCAAGGAAGGAACTCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCAG
CCATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAATCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGTGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCTACCAACCCGCAAGAGTGCTTTATTGGCGAAATCGGCCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4T2GZR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624