Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMQ63_RS03875 Genome accession   NZ_CP135063
Coordinates   810013..810747 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain ID32563     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 805013..815747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS03845 (RMQ63_03845) rnpM 805240..805536 (-) 297 WP_024389460.1 RNase P modulator RnpM -
  RMQ63_RS03850 (RMQ63_03850) nusA 805553..806695 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  RMQ63_RS03855 (RMQ63_03855) rimP 806769..807239 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  RMQ63_RS03860 (RMQ63_03860) trmB 807497..808135 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMQ63_RS03865 (RMQ63_03865) ccrZ 808132..808926 (-) 795 WP_313681172.1 cell cycle regulator CcrZ -
  RMQ63_RS03870 (RMQ63_03870) - 808976..810016 (-) 1041 WP_313681173.1 ABC transporter permease -
  RMQ63_RS03875 (RMQ63_03875) pptA 810013..810747 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  RMQ63_RS03880 (RMQ63_03880) - 810810..811223 (+) 414 WP_105134828.1 HIT family protein -
  RMQ63_RS03885 (RMQ63_03885) - 811225..811527 (+) 303 WP_024383569.1 hypothetical protein -
  RMQ63_RS03890 (RMQ63_03890) - 811997..813190 (-) 1194 WP_313681177.1 LCP family protein -
  RMQ63_RS03895 (RMQ63_03895) - 813187..813714 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  RMQ63_RS03900 (RMQ63_03900) tsaE 813707..814147 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=884669 RMQ63_RS03875 WP_002942356.1 810013..810747(-) (pptA) [Streptococcus suis strain ID32563]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=884669 RMQ63_RS03875 WP_002942356.1 810013..810747(-) (pptA) [Streptococcus suis strain ID32563]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAACTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGTGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721