Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RMQ63_RS02070 Genome accession   NZ_CP135063
Coordinates   430302..432104 (-) Length   600 a.a.
NCBI ID   WP_313681038.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 425302..437104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS02045 (RMQ63_02045) - 426746..427231 (-) 486 WP_044668712.1 LURP-one-related/scramblase family protein -
  RMQ63_RS02050 (RMQ63_02050) prsA 427440..428441 (-) 1002 WP_109371642.1 peptidylprolyl isomerase PrsA -
  RMQ63_RS02055 (RMQ63_02055) - 428504..429223 (-) 720 WP_313681037.1 O-methyltransferase -
  RMQ63_RS02060 (RMQ63_02060) - 429298..429846 (-) 549 WP_109371644.1 DUF6630 family protein -
  RMQ63_RS02065 (RMQ63_02065) - 429857..430300 (-) 444 WP_109371646.1 hypothetical protein -
  RMQ63_RS02070 (RMQ63_02070) pepF 430302..432104 (-) 1803 WP_313681038.1 oligoendopeptidase F Regulator
  RMQ63_RS02075 (RMQ63_02075) - 432177..432812 (-) 636 WP_024410962.1 hypothetical protein -
  RMQ63_RS02080 (RMQ63_02080) coiA 432866..433798 (-) 933 WP_024410961.1 competence protein CoiA Machinery gene
  RMQ63_RS02085 (RMQ63_02085) - 433866..434432 (+) 567 WP_024391871.1 GNAT family N-acetyltransferase -
  RMQ63_RS02090 (RMQ63_02090) metG 434462..436465 (-) 2004 WP_024410960.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69217.36 Da        Isoelectric Point: 4.5333

>NTDB_id=884656 RMQ63_RS02070 WP_313681038.1 430302..432104(-) (pepF) [Streptococcus suis strain ID32563]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEVFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTTISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRRT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=884656 RMQ63_RS02070 WP_313681038.1 430302..432104(-) (pepF) [Streptococcus suis strain ID32563]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAGTTGGCAGATTTGCAAGCAGAAACAGAAAAAACGAAAGAATTTGCTGGTCACTTGCTAGACTCAGCGAAGAGCC
TTTTGGAAATCAGTGAAACGCAGCTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGTCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTATCACAAGAGGTAGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGTCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATTCACTTTATGGAGTCTAAAAACCGTGAAGTCCGTCAAGAAG
CCTATGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACACTTCAATCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
TGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCACGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATCGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGCCACTCACTTCATTCTATGTTGACTCGTAGGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATTTACAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTATGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695