Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RPB93_RS20490 Genome accession   NZ_CP135060
Coordinates   4016330..4016653 (+) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus strain B126_1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4011330..4021653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB93_RS20475 (RPB93_20475) - 4011844..4013211 (-) 1368 WP_025709888.1 aldehyde dehydrogenase -
  RPB93_RS20480 (RPB93_20480) inhA1 4013383..4015773 (-) 2391 WP_001035937.1 M6 family metalloprotease immune inhibitor InhA1 -
  RPB93_RS20485 (RPB93_20485) - 4016116..4016250 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  RPB93_RS20490 (RPB93_20490) sinR 4016330..4016653 (+) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  RPB93_RS20495 (RPB93_20495) calY 4016720..4017313 (-) 594 WP_000053714.1 biofilm matrix protein CalY -
  RPB93_RS20500 (RPB93_20500) - 4017691..4018467 (-) 777 WP_313755186.1 DUF4047 domain-containing protein -
  RPB93_RS20505 (RPB93_20505) - 4018587..4019174 (-) 588 WP_000172852.1 CalY family protein -
  RPB93_RS20510 (RPB93_20510) sipW 4019235..4019804 (-) 570 WP_000767792.1 signal peptidase I SipW -
  RPB93_RS20515 (RPB93_20515) - 4019995..4021281 (-) 1287 WP_000247021.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=884632 RPB93_RS20490 WP_000578884.1 4016330..4016653(+) (sinR) [Bacillus cereus strain B126_1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=884632 RPB93_RS20490 WP_000578884.1 4016330..4016653(+) (sinR) [Bacillus cereus strain B126_1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682