Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RPB93_RS19180 Genome accession   NZ_CP135060
Coordinates   3774274..3774876 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain B126_1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3769274..3779876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB93_RS19135 (RPB93_19135) gpsB 3769500..3769835 (-) 336 WP_000622431.1 cell division regulator GpsB -
  RPB93_RS19140 (RPB93_19140) - 3769933..3770487 (-) 555 WP_000862910.1 DUF1273 domain-containing protein -
  RPB93_RS19145 (RPB93_19145) - 3770544..3770972 (-) 429 WP_000546270.1 CotD family spore coat protein -
  RPB93_RS19150 (RPB93_19150) - 3771128..3771730 (-) 603 WP_061113531.1 YppG family protein -
  RPB93_RS19155 (RPB93_19155) - 3771908..3772099 (+) 192 WP_000242652.1 YppF family protein -
  RPB93_RS19160 (RPB93_19160) - 3772126..3772470 (-) 345 WP_000786939.1 YppE family protein -
  RPB93_RS19165 (RPB93_19165) - 3772486..3772728 (-) 243 WP_001252036.1 hypothetical protein -
  RPB93_RS19170 (RPB93_19170) - 3772814..3772993 (+) 180 WP_001987054.1 hypothetical protein -
  RPB93_RS19175 (RPB93_19175) - 3773145..3774170 (-) 1026 WP_002023716.1 DUF2515 domain-containing protein -
  RPB93_RS19180 (RPB93_19180) recU 3774274..3774876 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  RPB93_RS19185 (RPB93_19185) - 3774943..3777636 (+) 2694 WP_001283092.1 PBP1A family penicillin-binding protein -
  RPB93_RS19190 (RPB93_19190) - 3777662..3778180 (-) 519 WP_006924378.1 YpoC family protein -
  RPB93_RS19195 (RPB93_19195) nth 3778184..3778831 (-) 648 WP_000933030.1 endonuclease III -
  RPB93_RS19200 (RPB93_19200) dnaD 3778847..3779554 (-) 708 WP_000728542.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=884630 RPB93_RS19180 WP_000155598.1 3774274..3774876(+) (recU) [Bacillus cereus strain B126_1]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=884630 RPB93_RS19180 WP_000155598.1 3774274..3774876(+) (recU) [Bacillus cereus strain B126_1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635