Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RPB93_RS07275 Genome accession   NZ_CP135060
Coordinates   1384112..1384546 (+) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain B126_1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1379112..1389546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB93_RS07255 (RPB93_07255) - 1380026..1381189 (-) 1164 WP_000434577.1 aminotransferase A -
  RPB93_RS07260 (RPB93_07260) - 1381312..1381512 (-) 201 WP_000929280.1 hypothetical protein -
  RPB93_RS07265 (RPB93_07265) kinB 1381823..1383097 (+) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  RPB93_RS07270 (RPB93_07270) - 1383136..1383885 (-) 750 WP_000388471.1 DUF3967 domain-containing protein -
  RPB93_RS07275 (RPB93_07275) nucA/comI 1384112..1384546 (+) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  RPB93_RS07280 (RPB93_07280) comJ 1384583..1384972 (+) 390 WP_000424030.1 competence protein ComJ -
  RPB93_RS07285 (RPB93_07285) metE 1385011..1387299 (-) 2289 WP_001007610.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RPB93_RS07290 (RPB93_07290) - 1387798..1388355 (-) 558 WP_000062062.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=884621 RPB93_RS07275 WP_000811494.1 1384112..1384546(+) (nucA/comI) [Bacillus cereus strain B126_1]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=884621 RPB93_RS07275 WP_000811494.1 1384112..1384546(+) (nucA/comI) [Bacillus cereus strain B126_1]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGTGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549