Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RPB93_RS06425 Genome accession   NZ_CP135060
Coordinates   1231930..1232724 (+) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain B126_1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226930..1237724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB93_RS06410 (RPB93_06410) argR 1227769..1228218 (+) 450 WP_001032580.1 arginine repressor ArgR -
  RPB93_RS06415 (RPB93_06415) recN 1228483..1230222 (+) 1740 WP_313755469.1 DNA repair protein RecN Machinery gene
  RPB93_RS06420 (RPB93_06420) spoIVB 1230341..1231639 (+) 1299 WP_002024767.1 SpoIVB peptidase -
  RPB93_RS06425 (RPB93_06425) spo0A 1231930..1232724 (+) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  RPB93_RS06430 (RPB93_06430) - 1232977..1233540 (+) 564 WP_000428230.1 PRK06770 family protein -
  RPB93_RS06435 (RPB93_06435) - 1233783..1233929 (-) 147 WP_001247671.1 YycC family protein -
  RPB93_RS06440 (RPB93_06440) - 1233980..1234708 (+) 729 WP_000172583.1 glycerophosphodiester phosphodiesterase -
  RPB93_RS06445 (RPB93_06445) - 1234758..1234991 (-) 234 WP_001190211.1 DUF2627 domain-containing protein -
  RPB93_RS06450 (RPB93_06450) - 1235129..1237201 (+) 2073 WP_033666632.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=884620 RPB93_RS06425 WP_011110369.1 1231930..1232724(+) (spo0A) [Bacillus cereus strain B126_1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=884620 RPB93_RS06425 WP_011110369.1 1231930..1232724(+) (spo0A) [Bacillus cereus strain B126_1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818