Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RPB93_RS05780 Genome accession   NZ_CP135060
Coordinates   1123980..1124726 (+) Length   248 a.a.
NCBI ID   WP_000487015.1    Uniprot ID   A0A9W5E8B7
Organism   Bacillus cereus strain B126_1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1118980..1129726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB93_RS05750 (RPB93_05750) - 1119269..1121413 (+) 2145 WP_000091509.1 HD family phosphohydrolase -
  RPB93_RS05755 (RPB93_05755) ybeY 1121410..1121880 (+) 471 WP_000054687.1 rRNA maturation RNase YbeY -
  RPB93_RS05760 (RPB93_05760) - 1121877..1122230 (+) 354 WP_000715467.1 diacylglycerol kinase family protein -
  RPB93_RS05765 (RPB93_05765) - 1122330..1122728 (+) 399 WP_001086285.1 cytidine deaminase -
  RPB93_RS05770 (RPB93_05770) era 1122721..1123626 (+) 906 WP_001080230.1 GTPase Era -
  RPB93_RS05775 (RPB93_05775) - 1123803..1123946 (+) 144 WP_000883924.1 YqzL family protein -
  RPB93_RS05780 (RPB93_05780) recO 1123980..1124726 (+) 747 WP_000487015.1 DNA repair protein RecO Machinery gene
  RPB93_RS05785 (RPB93_05785) - 1124834..1125466 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  RPB93_RS05790 (RPB93_05790) - 1125496..1126308 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  RPB93_RS05795 (RPB93_05795) - 1126676..1126807 (+) 132 WP_002024806.1 hypothetical protein -
  RPB93_RS05800 (RPB93_05800) - 1126944..1127087 (+) 144 WP_000479733.1 hypothetical protein -
  RPB93_RS05805 (RPB93_05805) dnaG 1127169..1128965 (+) 1797 WP_000528223.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28634.21 Da        Isoelectric Point: 8.0566

>NTDB_id=884617 RPB93_RS05780 WP_000487015.1 1123980..1124726(+) (recO) [Bacillus cereus strain B126_1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGSKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=884617 RPB93_RS05780 WP_000487015.1 1123980..1124726(+) (recO) [Bacillus cereus strain B126_1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGTCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGCCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548