Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RJT70_RS14955 Genome accession   NZ_CP135059
Coordinates   3293752..3294153 (-) Length   133 a.a.
NCBI ID   WP_024711139.1    Uniprot ID   A0A855JH23
Organism   Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3288752..3299153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT70_RS14940 - 3290766..3292802 (-) 2037 WP_014504131.1 methyl-accepting chemotaxis protein -
  RJT70_RS14945 - 3292842..3293372 (-) 531 WP_003482487.1 chemotaxis protein CheW -
  RJT70_RS14950 - 3293372..3293734 (-) 363 WP_014504132.1 response regulator -
  RJT70_RS14955 pilG 3293752..3294153 (-) 402 WP_024711139.1 twitching motility response regulator PilG Regulator
  RJT70_RS14960 gshB 3294391..3295341 (+) 951 WP_014504134.1 glutathione synthase -
  RJT70_RS14965 - 3295338..3296213 (+) 876 WP_014504135.1 energy transducer TonB -
  RJT70_RS14970 - 3296504..3297454 (-) 951 WP_353849745.1 ADP-ribosylglycohydrolase family protein -
  RJT70_RS14975 tsaB 3297417..3298136 (-) 720 WP_014504137.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 6.9539

>NTDB_id=884590 RJT70_RS14955 WP_024711139.1 3293752..3294153(-) (pilG) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
MTENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=884590 RJT70_RS14955 WP_024711139.1 3293752..3294153(-) (pilG) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
ATGACTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855JH23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684