Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AADH43_RS15080 Genome accession   NZ_CP151155
Coordinates   3227173..3229254 (+) Length   693 a.a.
NCBI ID   WP_005459023.1    Uniprot ID   Q87TB3
Organism   Vibrio parahaemolyticus strain vp-pir-201806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3222173..3234254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADH43_RS15060 (AADH43_15060) gmk 3223076..3223699 (+) 624 WP_005496750.1 guanylate kinase -
  AADH43_RS15065 (AADH43_15065) rpoZ 3223881..3224153 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  AADH43_RS15070 (AADH43_15070) spoT 3224193..3226313 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  AADH43_RS15075 (AADH43_15075) trmH 3226371..3227054 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  AADH43_RS15080 (AADH43_15080) recG 3227173..3229254 (+) 2082 WP_005459023.1 ATP-dependent DNA helicase RecG Machinery gene
  AADH43_RS15085 (AADH43_15085) - 3229487..3230878 (+) 1392 WP_005459007.1 uracil-xanthine permease family protein -
  AADH43_RS15090 (AADH43_15090) envZ 3230943..3232235 (-) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  AADH43_RS15095 (AADH43_15095) ompR 3232341..3233060 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  AADH43_RS15100 (AADH43_15100) - 3233279..3233671 (-) 393 WP_021449007.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76722.75 Da        Isoelectric Point: 7.9784

>NTDB_id=884565 AADH43_RS15080 WP_005459023.1 3227173..3229254(+) (recG) [Vibrio parahaemolyticus strain vp-pir-201806]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALALLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=884565 AADH43_RS15080 WP_005459023.1 3227173..3229254(+) (recG) [Vibrio parahaemolyticus strain vp-pir-201806]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCTGCAGTACAAGGCAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACCGATGGCCTGCGTCAA
ATCACCTTACGCAACCTGACTGAGCAAGCATTGGCGCTACTCGATAAAGCAGCCGTGCAAGAGTTGCTGCCTTCGGGCTT
GTACAACCACCAAATTACCATGTCGCAGGCATTGCACACCATTCATCGCCCACCACCAACCATCAATTTAGATGAGTTTG
ATGAAGGTAAGCATCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGCGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCGCACCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGAAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTTGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCGCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCTCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCAACTCCGATTCCTCGCACACTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGGGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCGGAAGTGTTGGAAGCTCAAGCCGCAGCAGACAC
CGCCGAAGAGTTGCAGCGCAAACTGCCAGATGTAAAAATTGGCCTAGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCGCAATTACATCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACTCCCCCCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTAGAGATCCGCGGGCCCGGCGAATTATTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATCCCAGAAGTTCAGCGTATTGCACGTCA
TATTCACGACAATTACCCAACCAATGCAGCCGCTATTATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87TB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.299

96.681

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.299

96.681

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.666

94.949

0.377