Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AADH43_RS08390 Genome accession   NZ_CP151155
Coordinates   1759241..1760785 (+) Length   514 a.a.
NCBI ID   WP_031856249.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-pir-201806     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754241..1765785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADH43_RS08365 (AADH43_08365) - 1754542..1754862 (+) 321 WP_005454817.1 STAS domain-containing protein -
  AADH43_RS08370 (AADH43_08370) - 1754889..1755791 (+) 903 WP_031856247.1 OmpA family protein -
  AADH43_RS08375 (AADH43_08375) - 1755788..1757890 (+) 2103 WP_085577151.1 SLBB domain-containing protein -
  AADH43_RS08380 (AADH43_08380) - 1757890..1758576 (+) 687 WP_021454342.1 CpsD/CapB family tyrosine-protein kinase -
  AADH43_RS08385 (AADH43_08385) - 1758589..1758969 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  AADH43_RS08390 (AADH43_08390) luxO 1759241..1760785 (+) 1545 WP_031856249.1 sigma-54 dependent transcriptional regulator Regulator
  AADH43_RS08395 (AADH43_08395) - 1760760..1761830 (+) 1071 WP_031856250.1 glycosyltransferase family 4 protein -
  AADH43_RS08400 (AADH43_08400) - 1761981..1763165 (+) 1185 WP_031856251.1 glycosyltransferase -
  AADH43_RS08405 (AADH43_08405) - 1763176..1764348 (+) 1173 WP_085627161.1 glycosyltransferase family 4 protein -
  AADH43_RS08410 (AADH43_08410) - 1764341..1765771 (+) 1431 WP_031856253.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57490.37 Da        Isoelectric Point: 5.8567

>NTDB_id=884530 AADH43_RS08390 WP_031856249.1 1759241..1760785(+) (luxO) [Vibrio parahaemolyticus strain vp-pir-201806]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQVRTVTPV
HVESSSPSNNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=884530 AADH43_RS08390 WP_031856249.1 1759241..1760785(+) (luxO) [Vibrio parahaemolyticus strain vp-pir-201806]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAACCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATATAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTG
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTTACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCACA
ACACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTAGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGTAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCGATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTATACCGTAAGAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477