Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT62_RS02310 Genome accession   NZ_CP135027
Coordinates   489695..490213 (-) Length   172 a.a.
NCBI ID   WP_343153588.1    Uniprot ID   -
Organism   Buchnera aphidicola (Mindarus keteleerifoliae) strain Minke19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 484695..495213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT62_RS02285 (RJT62_02285) deoD 484710..485432 (-) 723 WP_343153972.1 purine-nucleoside phosphorylase -
  RJT62_RS02290 (RJT62_02290) - 485470..486711 (-) 1242 WP_343153581.1 phosphopentomutase -
  RJT62_RS02295 (RJT62_02295) ansA 487043..488086 (+) 1044 WP_343153583.1 asparaginase -
  RJT62_RS02300 (RJT62_02300) - 488110..488685 (-) 576 WP_343153585.1 NifU family protein -
  RJT62_RS02305 (RJT62_02305) bioH 488814..489608 (+) 795 WP_343153587.1 pimeloyl-ACP methyl ester esterase BioH -
  RJT62_RS02310 (RJT62_02310) ssb 489695..490213 (-) 519 WP_343153588.1 single-stranded DNA-binding protein Machinery gene
  RJT62_RS02315 (RJT62_02315) dusA 490449..491468 (+) 1020 WP_343153590.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJT62_RS02320 (RJT62_02320) dnaB 491731..493119 (+) 1389 WP_343153592.1 replicative DNA helicase -
  RJT62_RS02325 (RJT62_02325) gshB 493253..494203 (+) 951 WP_343153594.1 glutathione synthase -
  RJT62_RS02330 (RJT62_02330) ruvX 494230..494646 (+) 417 WP_343153596.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19316.46 Da        Isoelectric Point: 7.3175

>NTDB_id=884497 RJT62_RS02310 WP_343153588.1 489695..490213(-) (ssb) [Buchnera aphidicola (Mindarus keteleerifoliae) strain Minke19]
MASRGINKVILIGNLGQDPEVRYMPNGTAVSNITLATSDVWKDKNTGENKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDKNNLDRYTTEIVVNIGGTMQMLGNRHSHSNNMRDESRSSSDSKSLSFNEKSSKNNLSNKGNKLSTVNSI
SDIDFDDEDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=884497 RJT62_RS02310 WP_343153588.1 489695..490213(-) (ssb) [Buchnera aphidicola (Mindarus keteleerifoliae) strain Minke19]
ATGGCTAGTAGAGGAATTAATAAAGTAATATTAATAGGAAATTTAGGTCAGGATCCAGAGGTTAGATATATGCCTAATGG
AACTGCAGTATCTAATATAACATTAGCAACTTCAGATGTTTGGAAAGATAAAAATACAGGAGAGAACAAAGAAAAAACAG
AATGGCATAGAGTGGTTTTGTTTGGAAAATTAGCAGAAATTGCGGGAGAATATTTACGTAAAGGATCTCAAGTATATATA
GAAGGTTCTTTACAAACTAGAAAATGGCAAGATAAAAATAATTTAGATCGATATACAACCGAAATTGTTGTAAATATAGG
AGGAACAATGCAAATGTTGGGTAATAGACACTCTCATTCTAATAATATGAGAGACGAAAGTCGTTCCTCTTCTGATTCTA
AATCATTATCTTTCAATGAAAAATCTTCTAAAAATAATTTGAGTAATAAAGGTAACAAATTATCTACTGTGAATTCTATA
TCTGATATAGACTTTGATGATGAAGACATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.222

100

0.599
  ssb Glaesserella parasuis strain SC1401

44.751

100

0.471
  ssb Neisseria gonorrhoeae MS11

42.373

100

0.436
  ssb Neisseria meningitidis MC58

41.477

100

0.424