Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT25_RS01870 Genome accession   NZ_CP135009
Coordinates   386367..386903 (-) Length   178 a.a.
NCBI ID   WP_343126518.1    Uniprot ID   -
Organism   Buchnera aphidicola (Nippolachnus piri) strain Nippi10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 381367..391903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT25_RS01840 (RJT25_01840) rpe 382043..382711 (-) 669 WP_343126513.1 ribulose-phosphate 3-epimerase -
  RJT25_RS01845 (RJT25_01845) aroB 382741..383859 (-) 1119 WP_343126514.1 3-dehydroquinate synthase -
  RJT25_RS01850 (RJT25_01850) aroK 383894..384430 (-) 537 WP_343126515.1 shikimate kinase AroK -
  RJT25_RS01860 (RJT25_01860) - 384860..385441 (-) 582 WP_343126516.1 NifU family protein -
  RJT25_RS01865 (RJT25_01865) - 385563..386345 (+) 783 WP_343126517.1 alpha/beta fold hydrolase -
  RJT25_RS01870 (RJT25_01870) ssb 386367..386903 (-) 537 WP_343126518.1 single-stranded DNA-binding protein Machinery gene
  RJT25_RS01875 (RJT25_01875) dusA 387086..388084 (+) 999 WP_343128836.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJT25_RS01880 (RJT25_01880) dnaB 388243..389625 (+) 1383 WP_343126520.1 replicative DNA helicase -
  RJT25_RS01885 (RJT25_01885) ruvX 389707..390138 (+) 432 WP_343126521.1 Holliday junction resolvase RuvX -
  RJT25_RS01890 (RJT25_01890) - 390229..391350 (+) 1122 WP_343126522.1 YggW family oxidoreductase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 20445.26 Da        Isoelectric Point: 9.0618

>NTDB_id=884465 RJT25_RS01870 WP_343126518.1 386367..386903(-) (ssb) [Buchnera aphidicola (Nippolachnus piri) strain Nippi10]
MASRGINKVILIGNLGQDPEIRYMPNGGAVLNMTIATSENWKDKNTGELKEKTEWHRIVVFGKLAEIAAQYLHKGSQIYI
EGTLQTRKWQDQNGIDRYITEIIVNITGTMQMLGNRNSNQNYVKDKEKVLKYSSDTLEKGINKIEKQYASNPVKEEYKKQ
KNLIDTTSKIDFEDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=884465 RJT25_RS01870 WP_343126518.1 386367..386903(-) (ssb) [Buchnera aphidicola (Nippolachnus piri) strain Nippi10]
ATGGCTAGTAGAGGAATTAACAAAGTAATATTAATTGGAAATTTAGGGCAAGATCCTGAAATTCGTTATATGCCTAATGG
TGGAGCTGTATTAAATATGACAATTGCTACGTCAGAAAATTGGAAAGATAAGAATACTGGAGAATTAAAAGAAAAGACTG
AATGGCATCGTATTGTAGTTTTTGGAAAATTAGCTGAAATAGCAGCTCAATATTTACATAAAGGTTCTCAAATTTATATT
GAAGGTACGTTACAAACTCGAAAATGGCAAGATCAAAATGGTATTGATAGATATATTACTGAAATTATTGTTAATATTAC
GGGAACAATGCAGATGTTAGGTAATAGAAATTCTAATCAAAATTATGTTAAAGATAAAGAAAAAGTATTAAAATATTCTT
CAGATACTTTAGAAAAAGGTATTAATAAAATTGAAAAACAATATGCTTCGAATCCTGTAAAAGAAGAATATAAAAAACAA
AAAAATTTAATTGATACAACTTCTAAAATAGATTTTGAGGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.632

100

0.562
  ssb Glaesserella parasuis strain SC1401

44.751

100

0.455
  ssb Neisseria gonorrhoeae MS11

40.884

100

0.416
  ssb Neisseria meningitidis MC58

40.884

100

0.416