Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ViNHUV68_RS12235 Genome accession   NZ_CP134975
Coordinates   2679652..2680170 (-) Length   172 a.a.
NCBI ID   WP_038176134.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2674652..2685170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS12215 (ViNHUV68_24650) - 2676170..2677639 (+) 1470 WP_391088340.1 methyl-accepting chemotaxis protein -
  ViNHUV68_RS12220 (ViNHUV68_24660) - 2677676..2678371 (-) 696 WP_038176136.1 VC0807 family protein -
  ViNHUV68_RS12230 (ViNHUV68_24680) - 2679121..2679597 (+) 477 WP_038176135.1 RDD family protein -
  ViNHUV68_RS12235 (ViNHUV68_24690) luxS 2679652..2680170 (-) 519 WP_038176134.1 S-ribosylhomocysteine lyase Regulator
  ViNHUV68_RS12240 (ViNHUV68_24700) gshA 2680296..2681864 (-) 1569 WP_391088343.1 glutamate--cysteine ligase -
  ViNHUV68_RS12245 (ViNHUV68_24710) - 2681973..2684831 (-) 2859 WP_391088345.1 insulinase family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19101.90 Da        Isoelectric Point: 4.7297

>NTDB_id=884391 ViNHUV68_RS12235 WP_038176134.1 2679652..2680170(-) (luxS) [Vibrio sp. NH-UV-68]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNSNDVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLAAMKDVLKVESQNKIPELNEYQCGTAEMHSLDEAKQIAEAILAAGISVNKNDELA
LPEAMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=884391 ViNHUV68_RS12235 WP_038176134.1 2679652..2680170(-) (luxS) [Vibrio sp. NH-UV-68]
ATGCCGTTATTAGATAGTTTTACCGTTGATCATACAAGAATGAATGCACCTGCAGTTCGTGTTGCCAAAACCATGACAAC
GCCAAAGGGGGATACCATTACGGTGTTTGATCTTCGCTTTACTGCGCCAAATAAAGATATTTTATCTGAAAGAGGGATTC
ATACACTTGAGCACCTCTATGCTGGCTTTATGCGTAATCACCTAAACAGTAATGATGTTGAAATCATTGATATCTCACCG
ATGGGCTGTCGTACTGGATTTTATATGAGCCTAATCGGTACACCTCAAGAGCAGCAAGTGGCAGACGCTTGGTTAGCGGC
GATGAAAGATGTACTTAAAGTGGAAAGCCAAAATAAAATCCCAGAACTCAACGAGTATCAATGTGGTACGGCAGAGATGC
ACTCGCTTGATGAAGCTAAGCAAATTGCTGAGGCGATTTTAGCGGCAGGTATTTCAGTCAATAAAAACGATGAGCTTGCA
CTTCCAGAAGCGATGTTAAAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866