Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ViNHUV68_RS06065 Genome accession   NZ_CP134975
Coordinates   1294304..1295728 (-) Length   474 a.a.
NCBI ID   WP_391089912.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289304..1300728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS06040 (ViNHUV68_12150) - 1289889..1290539 (+) 651 WP_391090276.1 thiopurine S-methyltransferase -
  ViNHUV68_RS06045 (ViNHUV68_12160) purT 1290615..1291790 (-) 1176 WP_391089906.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ViNHUV68_RS06050 (ViNHUV68_12170) cdd 1291963..1292850 (-) 888 WP_391089908.1 cytidine deaminase -
  ViNHUV68_RS06055 (ViNHUV68_12180) - 1293085..1293762 (-) 678 WP_391089910.1 CidB/LrgB family autolysis modulator -
  ViNHUV68_RS06060 (ViNHUV68_12190) - 1293762..1294127 (-) 366 WP_038174357.1 CidA/LrgA family protein -
  ViNHUV68_RS06065 (ViNHUV68_12200) sbcB 1294304..1295728 (-) 1425 WP_391089912.1 exodeoxyribonuclease I Machinery gene
  ViNHUV68_RS06070 - 1296011..1296088 (+) 78 Protein_1169 hypothetical protein -
  ViNHUV68_RS06075 (ViNHUV68_12210) - 1296116..1296343 (+) 228 WP_391089914.1 hypothetical protein -
  ViNHUV68_RS06080 (ViNHUV68_12220) - 1297137..1298258 (+) 1122 WP_391090278.1 AAA family ATPase -
  ViNHUV68_RS06085 (ViNHUV68_12230) - 1298258..1300450 (+) 2193 WP_391089916.1 S8 family serine peptidase -
  ViNHUV68_RS06090 - 1300461..1300628 (-) 168 WP_391089918.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54505.07 Da        Isoelectric Point: 5.3605

>NTDB_id=884385 ViNHUV68_RS06065 WP_391089912.1 1294304..1295728(-) (sbcB) [Vibrio sp. NH-UV-68]
MKTNEQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQTAETQGLIEP
EFIGKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWKNGNSRWDLLDVMRACYALRPEGINWPENDEGFI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECRY
TSWIVPVAWHPTNQNAVICVDLAKDPQALLDLDVESLNQRLYTKRSELGPDELPVPVKLVHLNKCPILAPAKTLTAENAA
AIGIDRAKCLENLARLRQHPEIREKLIGVYTIEREYEKSTDVDTQLYDGFFSPADKAAMDIIRETDPNHLAALDISFNDP
RIKPLLFRYRARHYPWTLDEAEQQRWANHCRDYFESRIEQYMLNLENLVHEHESDASKMAILKSIYQYVEKRVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=884385 ViNHUV68_RS06065 WP_391089912.1 1294304..1295728(-) (sbcB) [Vibrio sp. NH-UV-68]
ATGAAAACTAACGAACAACCTACGTTCTTCTTTTTTGATTACGAAACGTGGGGAACAAGCCCTGCCAAAGATCGTCCTTG
TCAATTTGCTGGCGTGCGCACCGATATGGACTTTAATATCATTGGCGAGCCTCTTGTTATCTATTGCCAGCCACCTGCAG
ACTACTTACCATCCCCAGAAGCGGCTCTGATTACCGGCATTACACCACAAACGGCAGAGACCCAAGGCCTTATCGAGCCA
GAATTTATCGGCAAAATCCATGAACAACTTGCCACGCCTAACACCATTAGCCTTGGTTACAATAGTATTCGTTTTGATGA
TGAAGTAACACGCTATACCTGCTATCGCAATTTTATCGACCCATACGCATGGAGTTGGAAAAATGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGTGCTTGTTACGCACTGCGGCCTGAAGGCATTAATTGGCCAGAAAACGACGAAGGATTTATT
AGCTTCAAGCTTGAGCATCTCTCGGTTGCCAACGGCATTGAACACGCCAACGCTCACGACGCGATGGCCGATGTGATCGC
CACGATTGAAATGGCTAAAAAAGTGAAAGCCGCACAGCCTAAACTGTTCGACTATTTCTTGAGCATGCGTCACAAGCGTA
AACTCAACGAGCTTATCGATATCGTTAATATGACCCCATTAATGCACGTATCAGGCATGCTGGGGAAAGAGTGTCGTTAC
ACCAGTTGGATTGTCCCCGTTGCTTGGCATCCAACCAACCAAAACGCCGTCATTTGTGTTGACCTAGCCAAAGATCCGCA
AGCCTTGCTCGATCTAGACGTCGAATCGCTCAATCAACGCTTATATACCAAGCGCTCTGAACTCGGTCCCGATGAATTGC
CGGTCCCTGTCAAGCTAGTGCATTTAAATAAATGCCCGATTTTAGCACCCGCCAAAACATTAACCGCTGAAAATGCCGCA
GCGATTGGCATTGATCGAGCAAAATGTTTAGAGAATCTCGCTCGTTTACGTCAACATCCAGAAATTCGTGAAAAACTCAT
CGGTGTTTACACGATTGAGCGTGAATACGAGAAAAGTACTGATGTCGATACTCAACTTTATGACGGTTTCTTCTCTCCGG
CTGATAAAGCGGCAATGGATATTATTCGTGAAACCGATCCTAATCATTTAGCGGCTTTGGATATCAGCTTTAACGATCCT
CGCATTAAACCCCTGTTGTTTCGCTATCGTGCTCGCCACTACCCTTGGACATTGGATGAAGCAGAGCAACAACGCTGGGC
GAACCACTGCCGTGACTACTTCGAAAGCCGTATTGAACAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAGA
GTGACGCAAGTAAGATGGCTATTTTAAAATCCATCTACCAATATGTAGAAAAACGAGTATCCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.556

99.367

0.781