Detailed information NTG0884374

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ViNHUV68_RS02000
• Genome accession: NZ_CP134975
• Coordinates: 400006..400986 (+)
• Length: 326 a.a.
• NCBI ID: WP_038173818.1
• Uniprot ID: -
• Organism: Vibrio sp. NH-UV-68
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 395006..405986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ViNHUV68_RS01965 (ViNHUV68_03970)	ftsB	395102..395380 (+)	279	WP_038173810.1	cell division protein FtsB	-
ViNHUV68_RS01970 (ViNHUV68_03980)	ispD	395381..396082 (+)	702	WP_391089067.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ViNHUV68_RS01975 (ViNHUV68_03990)	ispF	396086..396562 (+)	477	WP_038173812.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ViNHUV68_RS01980 (ViNHUV68_04000)	truD	396600..397643 (+)	1044	WP_391089069.1	tRNA pseudouridine(13) synthase TruD	-
ViNHUV68_RS01985 (ViNHUV68_04010)	surE	397643..398401 (+)	759	WP_038173814.1	5'/3'-nucleotidase SurE	-
ViNHUV68_RS01990 (ViNHUV68_04020)	-	398404..399030 (+)	627	WP_038173815.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ViNHUV68_RS01995 (ViNHUV68_04030)	-	399033..399932 (+)	900	WP_391089071.1	peptidoglycan DD-metalloendopeptidase family protein	-
ViNHUV68_RS02000 (ViNHUV68_04040)	rpoS	400006..400986 (+)	981	WP_038173818.1	RNA polymerase sigma factor RpoS	Regulator
ViNHUV68_RS02005 (ViNHUV68_04050)	-	401079..402359 (-)	1281	WP_038173819.1	HlyC/CorC family transporter	-
ViNHUV68_RS02010 (ViNHUV68_04060)	-	402497..403291 (-)	795	WP_391089073.1	cytochrome c biogenesis protein CcsA	-
ViNHUV68_RS02015 (ViNHUV68_04070)	ffh	403501..404889 (+)	1389	WP_038173821.1	signal recognition particle protein	-
ViNHUV68_RS02020 (ViNHUV68_04080)	rpsP	405097..405345 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
ViNHUV68_RS02025 (ViNHUV68_04090)	rimM	405371..405919 (+)	549	WP_038173822.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37349.40 Da
• Isoelectric Point: 4.9665

>NTDB_id=884374 ViNHUV68_RS02000 WP_038173818.1 400006..400986(+) (rpoS) [Vibrio sp. NH-UV-68]
MSISNAATKVEEFDMANEAKESLRTKNSTKPTKTVDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDDDIRDSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENL
FSVTED

Nucleotide

• Length: 981 bp

>NTDB_id=884374 ViNHUV68_RS02000 WP_038173818.1 400006..400986(+) (rpoS) [Vibrio sp. NH-UV-68]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTCGATATGGCCAACGAAGCAAAGGAATCGCTTCGAACCAAGAA
TTCTACTAAACCCACCAAAACCGTCGATGCTAAAGAAGAGTTTGATGCGTCCACGAAAAGTCTCGATGCCACACAGCTCT
ATTTGGGCGAAATTGGTTTTTCTCCACTACTCACCGCAGAAGAAGAAGTTCTTTATGCTCGTCGAGCGTTACGCGGAGAC
GAAGCGGCGCGTAAACGCATGATTGAAAGTAACCTGCGCTTAGTGGTTAAAATCTCCCGTCGTTATAGTAATCGTGGTTT
GGCTCTGCTCGATCTCATAGAGGAAGGCAACCTTGGTCTTATTCGCGCTGTCGAAAAATTTGATCCCGAGCGCGGTTTTA
GATTCTCTACTTACGCTACTTGGTGGATTCGTCAAACGATCGAACGGGCGTTAATGAACCAAACTCGCACCATTCGTTTA
CCAATTCATGTCGTTAAAGAGCTCAATATTTACTTGCGTACTGCACGTGAATTATCACAGAAGCTTGACCACGAACCTAC
CGCGGAAGAGATCGCAACACAGCTTGATAAACCCGTTGATGATGTCAGCAAAATGTTGCGCCTCAATGAGCGTATAAGCT
CAGTCGATACACCGATTGGTGGTGATGGCGAAAAAGCATTGCTGGATATCATTCCTGACATCAACAACTCTGATCCTGAA
GTGTCAACTCAAGATGATGACATTCGTGATTCTTTAATCCATTGGCTCGATGAGTTAAATCCGAAGCAGAAAGAGGTGCT
AGCGCGTCGTTTTGGTTTGCTCGGCTATGAGCCATCAACACTTGAAGAAGTGGGTCGTGAAATTAATCTAACTCGCGAAC
GTGTTCGTCAAATTCAAGTTGAAGGTCTACGTCGCTTACGTGAAATCCTAATCAAACAGGGTTTGAATATGGAGAACCTG
TTCAGCGTAACGGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.431	100	0.865