Detailed information NTG0884332

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ROL27_RS03475
• Genome accession: NZ_CP134883
• Coordinates: 740241..741440 (-)
• Length: 399 a.a.
• NCBI ID: WP_041937118.1
• Uniprot ID: -
• Organism: Bordetella parapertussis strain 400431-b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 735241..746440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ROL27_RS03455 (ROL27_03455)	phnC	735882..736652 (+)	771	WP_010927715.1	phosphonate ABC transporter ATP-binding protein	-
ROL27_RS03460 (ROL27_03460)	phnE	736670..737539 (+)	870	WP_169507383.1	phosphonate ABC transporter, permease protein PhnE	-
ROL27_RS03465 (ROL27_03465)	phnE	737536..738357 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
ROL27_RS03470 (ROL27_03470)	-	738596..740194 (+)	1599	WP_010927713.1	CYTH and CHAD domain-containing protein	-
ROL27_RS03475 (ROL27_03475)	pilA	740241..741440 (-)	1200	WP_041937118.1	signal recognition particle-docking protein FtsY	Machinery gene
ROL27_RS03480 (ROL27_03480)	rsmD	741516..742136 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ROL27_RS03485 (ROL27_03485)	coaD	742157..742666 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
ROL27_RS03490 (ROL27_03490)	-	742721..742972 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ROL27_RS03495 (ROL27_03495)	-	742969..744186 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
ROL27_RS03500 (ROL27_03500)	-	744194..744580 (-)	387	WP_010927711.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41695.66 Da
• Isoelectric Point: 5.2904

>NTDB_id=884332 ROL27_RS03475 WP_041937118.1 740241..741440(-) (pilA) [Bordetella parapertussis strain 400431-b]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=884332 ROL27_RS03475 WP_041937118.1 740241..741440(-) (pilA) [Bordetella parapertussis strain 400431-b]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (195-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516