Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RND68_RS06815 Genome accession   NZ_CP134882
Coordinates   1285984..1287054 (+) Length   356 a.a.
NCBI ID   WP_313293607.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 10-5-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280984..1292054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND68_RS06785 (RND68_06785) - 1281407..1282870 (+) 1464 WP_001017873.1 rhomboid family intramembrane serine protease -
  RND68_RS06790 (RND68_06790) - 1282851..1283054 (+) 204 WP_000087561.1 YqgQ family protein -
  RND68_RS06795 (RND68_06795) - 1283051..1284037 (+) 987 WP_000161314.1 ROK family glucokinase -
  RND68_RS06800 (RND68_06800) - 1284037..1284366 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RND68_RS06805 (RND68_06805) - 1284363..1284986 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RND68_RS06810 (RND68_06810) comGA 1285038..1286012 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RND68_RS06815 (RND68_06815) comGB 1285984..1287054 (+) 1071 WP_313293607.1 competence type IV pilus assembly protein ComGB Machinery gene
  RND68_RS06820 (RND68_06820) comGC 1287068..1287379 (+) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  RND68_RS06825 (RND68_06825) comGD 1287357..1287803 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  RND68_RS06830 (RND68_06830) comGE 1287790..1288089 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  RND68_RS06835 (RND68_06835) comGF 1288007..1288504 (+) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  RND68_RS06840 (RND68_06840) - 1288601..1288747 (+) 147 WP_001789879.1 hypothetical protein -
  RND68_RS06845 (RND68_06845) - 1288737..1289261 (+) 525 WP_001015125.1 shikimate kinase -
  RND68_RS06850 (RND68_06850) gcvT 1289420..1290511 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  RND68_RS06855 (RND68_06855) gcvPA 1290531..1291877 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41399.83 Da        Isoelectric Point: 10.1030

>NTDB_id=884308 RND68_RS06815 WP_313293607.1 1285984..1287054(+) (comGB) [Staphylococcus aureus strain 10-5-1]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNKILSLIG
YSDTIVLQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYASMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=884308 RND68_RS06815 WP_313293607.1 1285984..1287054(+) (comGB) [Staphylococcus aureus strain 10-5-1]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATAAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCCTGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATGCTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
GATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992