Detailed information NTG0088427

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ63_RS21375
• Genome accession: NZ_AP027637
• Coordinates: 4422793..4423818 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSJ-23
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4417793..4428818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ63_RS21355 (VEE43_41060)	metJ	4418854..4419171 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ63_RS21360 (VEE43_41070)	yiiX	4419355..4419963 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ63_RS21365 (VEE43_41080)	rpmE	4420024..4420236 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ63_RS21370 (VEE43_41090)	priA	4420439..4422637 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AABJ63_RS21375 (VEE43_41100)	cytR	4422793..4423818 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ63_RS21380 (VEE43_41110)	ftsN	4423910..4424869 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ63_RS21385 (VEE43_41120)	hslV	4424962..4425492 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ63_RS21390 (VEE43_41130)	hslU	4425502..4426833 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ63_RS21395 (VEE43_41140)	menA	4426900..4427826 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ63_RS21400 (VEE43_41150)	rraA	4427919..4428404 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ63_RS21405 (VEE43_41160)	zapB	4428489..4428734 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=88427 AABJ63_RS21375 WP_000644904.1 4422793..4423818(+) (cytR) [Escherichia coli strain PSJ-23]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=88427 AABJ63_RS21375 WP_000644904.1 4422793..4423818(+) (cytR) [Escherichia coli strain PSJ-23]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628