Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RKE25_RS16935 Genome accession   NZ_CP134867
Coordinates   3845467..3846846 (-) Length   459 a.a.
NCBI ID   WP_311839267.1    Uniprot ID   A0AA96ITW1
Organism   Dyella sp. BiH032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3840467..3851846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE25_RS16915 (RKE25_16915) ffh 3840659..3842038 (-) 1380 WP_311839263.1 signal recognition particle protein -
  RKE25_RS16920 (RKE25_16920) ccsA 3842133..3842930 (+) 798 WP_311839264.1 cytochrome c biogenesis protein CcsA -
  RKE25_RS16925 (RKE25_16925) - 3842947..3843555 (+) 609 WP_311839265.1 glutathione S-transferase family protein -
  RKE25_RS16930 (RKE25_16930) - 3843593..3845281 (-) 1689 WP_311839266.1 hydrogenase maturation protein -
  RKE25_RS16935 (RKE25_16935) radA 3845467..3846846 (-) 1380 WP_311839267.1 DNA repair protein RadA Machinery gene
  RKE25_RS16940 (RKE25_16940) alr 3846924..3848012 (-) 1089 WP_311839268.1 alanine racemase -
  RKE25_RS16945 (RKE25_16945) - 3848357..3849751 (-) 1395 WP_311839269.1 replicative DNA helicase -
  RKE25_RS16950 (RKE25_16950) rplI 3849982..3850431 (-) 450 WP_311839270.1 50S ribosomal protein L9 -
  RKE25_RS16955 (RKE25_16955) rpsR 3850536..3850766 (-) 231 WP_131150740.1 30S ribosomal protein S18 -
  RKE25_RS16960 (RKE25_16960) rpsF 3850783..3851214 (-) 432 WP_311839271.1 30S ribosomal protein S6 -
  RKE25_RS16965 (RKE25_16965) - 3851406..3851732 (-) 327 WP_311839272.1 iron-sulfur cluster assembly accessory protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48309.60 Da        Isoelectric Point: 7.4349

>NTDB_id=884208 RKE25_RS16935 WP_311839267.1 3845467..3846846(-) (radA) [Dyella sp. BiH032]
MAKAKTAYVCADCGAEHSKWQGQCIECGAWNTLSEFVVQPAVKSAGAARSAGYAGAAAGAPRVTPLTSVALTAESRTLTG
IGELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQMLGKLGEQLASVYVTGEESLAQVAARAQRLDLPLGPLHALAETCIE
RILEQAVSARPRVLVIDSIQTIWTELLAAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSEKGLREVPNPSAIFLSAHAEPTSGSAVMVTREGTRPLLVEVQALVDQ
SSLGNPRRVALGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEKTIAFGEV
GLSGEIRPVPNGEERLKEAAHHGFQRAIVPKANAPKKGKVGELEVIGVERLAQAIDACR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=884208 RKE25_RS16935 WP_311839267.1 3845467..3846846(-) (radA) [Dyella sp. BiH032]
ATGGCCAAGGCCAAGACCGCTTACGTATGCGCCGATTGCGGGGCGGAGCACTCCAAGTGGCAGGGGCAATGCATCGAATG
CGGCGCGTGGAACACGCTCAGCGAATTCGTGGTGCAGCCGGCGGTGAAGTCCGCCGGTGCCGCCCGCAGCGCGGGCTATG
CCGGCGCCGCCGCGGGTGCGCCCAGAGTCACGCCGCTCACGTCGGTGGCGCTGACGGCGGAGTCGCGCACGCTCACTGGT
ATCGGTGAACTCGACCGCGTACTGGGCGGTGGCCTGGTCGACGGTTCGGTGGTACTGATCGGCGGCGATCCCGGTATCGG
CAAATCCACGTTGCTGTTGCAGATGCTTGGCAAGCTGGGCGAGCAGCTCGCCAGCGTCTACGTCACCGGTGAGGAATCGC
TCGCCCAGGTAGCAGCCCGCGCGCAGCGCCTCGATCTGCCGCTGGGTCCGTTGCACGCGCTGGCCGAAACCTGCATCGAG
CGGATTCTCGAGCAGGCCGTGTCCGCCCGCCCGCGCGTGCTGGTGATCGACTCGATCCAAACCATCTGGACCGAGCTGCT
CGCCGCCGCACCGGGGTCGGTGAGCCAGGTGCGCGAATCCGCCGCCAAGCTCACGCGTTTCGCGAAGGAGACCGGTACCT
CGGTATTCCTCGTCGGCCACGTGACGAAGGAGGGCGGCATCGCTGGCCCGCGCGTGCTCGAGCACATGGTGGACGCAGTG
CTGTACTTCGAAGGCGAGTCAGGCAGCCGCTTCCGGGTGCTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTGAACGAGCT
GGGCGTATTCGCTATGTCGGAGAAGGGGCTGCGCGAAGTGCCCAATCCCTCCGCCATCTTTCTCTCCGCGCACGCCGAGC
CCACGTCGGGCAGCGCGGTGATGGTCACGCGCGAAGGCACGCGGCCTTTGCTGGTGGAAGTGCAGGCACTGGTGGATCAA
TCCTCGCTTGGCAATCCCCGGCGCGTGGCCCTGGGGTTGGAGCAGAACCGCCTGGCGATGCTGCTGGCCGTGCTGCATCG
GCACGGCGGCGTTGCGGCCTACGACCAGGACGTCTTCGTCAACGTGGTGGGCGGCATCCGCGTCCAGGAGACGGCCGCGG
ACTTGCCGGTCTTGCTGGCGGTGCTGTCGAGCCTGCGCGATCGTCCCCTGCCGGAAAAGACCATCGCCTTTGGCGAGGTG
GGCCTGTCCGGCGAGATTCGTCCCGTGCCCAACGGCGAGGAACGCCTGAAGGAGGCGGCGCACCATGGCTTCCAGCGCGC
GATCGTTCCGAAAGCGAATGCGCCGAAGAAGGGCAAGGTAGGGGAACTGGAAGTGATCGGCGTGGAACGGCTCGCGCAGG
CGATCGACGCCTGCCGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(84-225)

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

99.346

0.488
  radA Streptococcus mitis NCTC 12261

44.615

99.129

0.442
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442