Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RMP68_RS03085 Genome accession   NZ_CP134856
Coordinates   592312..594153 (+) Length   613 a.a.
NCBI ID   WP_390870253.1    Uniprot ID   A0AA96IKA6
Organism   Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 62     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587312..599153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP68_RS03075 (RMP68_03075) - 587935..588972 (+) 1038 WP_390870257.1 efflux RND transporter periplasmic adaptor subunit -
  RMP68_RS03080 (RMP68_03080) - 588975..592127 (+) 3153 WP_390870255.1 efflux RND transporter permease subunit -
  RMP68_RS03085 (RMP68_03085) uvrC 592312..594153 (+) 1842 WP_390870253.1 excinuclease ABC subunit UvrC Machinery gene
  RMP68_RS03090 (RMP68_03090) - 594146..595177 (+) 1032 WP_390870251.1 alanine racemase -
  RMP68_RS03095 (RMP68_03095) - 595208..596335 (-) 1128 WP_390870249.1 iron-containing alcohol dehydrogenase -
  RMP68_RS03100 (RMP68_03100) - 596459..597619 (+) 1161 WP_390870247.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71380.61 Da        Isoelectric Point: 9.1839

>NTDB_id=884152 RMP68_RS03085 WP_390870253.1 592312..594153(+) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 62]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKTVIVRMFIRDGKLVSSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKATIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKNASLDELKAVLNEVDSKNIFDYFRKEDNG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=884152 RMP68_RS03085 WP_390870253.1 592312..594153(+) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 62]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGCTAAAACCAAAATATAATGTACTTTTAAGAGATGATAAAACATATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATTGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGTGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAGAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAGGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAGCAACAAATGAAGATTTAGATATATTTGCTATAAAATCTGCTAGTAAAAAAACTGTGATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGTATCTTCAAATTATGATTTTATAAAGATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTACTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTACGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGTCTACAAACAACTCCTAGCTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGATAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATAGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCGAAAATCAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAG
TTTAGATGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGATAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501