Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RMQ68_RS07290 Genome accession   NZ_CP134854
Coordinates   1423019..1424860 (+) Length   613 a.a.
NCBI ID   WP_164469337.1    Uniprot ID   -
Organism   Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 52     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418019..1429860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ68_RS07285 (RMQ68_07295) - 1420444..1422897 (-) 2454 WP_164469338.1 methyl-accepting chemotaxis protein -
  RMQ68_RS07290 (RMQ68_07300) uvrC 1423019..1424860 (+) 1842 WP_164469337.1 excinuclease ABC subunit UvrC Machinery gene
  RMQ68_RS07295 (RMQ68_07305) - 1424853..1425884 (+) 1032 WP_390862458.1 alanine racemase -
  RMQ68_RS07300 (RMQ68_07310) - 1425915..1427042 (-) 1128 WP_390862460.1 iron-containing alcohol dehydrogenase -
  RMQ68_RS07305 (RMQ68_07315) - 1427165..1428325 (+) 1161 WP_390862462.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71339.60 Da        Isoelectric Point: 9.2559

>NTDB_id=884138 RMQ68_RS07290 WP_164469337.1 1423019..1424860(+) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 52]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLTTNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLKTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKSASLEELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=884138 RMQ68_RS07290 WP_164469337.1 1423019..1424860(+) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 52]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTTAAATTTACACCAAAACTACTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGTTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACATATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCCTACTCAAGTGGAGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCTTTGGTGCAAAAAAAATCTTGT
ATAAAAGGAAAAAGTGCTTGTCTATTTTATCAAATAGGAAAATGTAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAAGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAACAACAAATGAAGATTTGGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTAAGGATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTAAAAACAACTCCTAGTTTAATAGAAAGTTTTGATAACTCA
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGTTCTTTTGACAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAGAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTGGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCTATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGGAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATTAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCTAAAATCAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAGATAAAAAGCGCAAG
TTTAGAAGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501