Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   M9H32_RS00170 Genome accession   NZ_CP134832
Coordinates   40901..42529 (-) Length   542 a.a.
NCBI ID   WP_049427104.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADQHB     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35901..47529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H32_RS00145 (M9H32_00145) - 36083..36586 (-) 504 WP_049427094.1 DUF1643 domain-containing protein -
  M9H32_RS00150 (M9H32_00150) - 36602..36913 (-) 312 WP_049427096.1 DUF960 family protein -
  M9H32_RS00155 (M9H32_00155) - 37000..37350 (-) 351 WP_049427098.1 SAUGI family uracil-DNA glycosylase inhibitor -
  M9H32_RS00160 (M9H32_00160) - 37959..38642 (-) 684 WP_002475346.1 D-alanyl-D-alanine carboxypeptidase family protein -
  M9H32_RS00165 (M9H32_00165) pbp4 38890..40113 (+) 1224 WP_011082533.1 penicillin-binding protein PBP4 -
  M9H32_RS00170 (M9H32_00170) ccrB 40901..42529 (-) 1629 WP_049427104.1 cassette chromosome recombinase CcrB Machinery gene
  M9H32_RS00175 (M9H32_00175) ccrA 42551..43900 (-) 1350 WP_064212312.1 cassette chromosome recombinase CcrA Machinery gene
  M9H32_RS00180 (M9H32_00180) cch1 44134..45927 (-) 1794 WP_064212311.1 cassette chromosome replicative helicase -
  M9H32_RS00185 (M9H32_00185) ssb 45927..46223 (-) 297 WP_064212310.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62617.87 Da        Isoelectric Point: 9.8778

>NTDB_id=883953 M9H32_RS00170 WP_049427104.1 40901..42529(-) (ccrB) [Staphylococcus capitis strain ADQHB]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKSYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTRVNQENQVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDIMSQINQLKKQQNEDKSLFDAKQIGEILRHVFHNIEKMKKSQLK
ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=883953 M9H32_RS00170 WP_049427104.1 40901..42529(-) (ccrB) [Staphylococcus capitis strain ADQHB]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTGCGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTAGA
ATTTTTCAGTCTATCAGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAAGTTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAACATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTGCAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATTCATTGTCCTCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAC
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGCAACAAGGGGTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACGCGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTTAATGACATTATGAGTCAAATCAATCAACTCAAAAAACAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATTGGTGAAATATTGCGACACGTCTTTCATAATATTGAGAAAATGAAAAAATCTCAACTTAAA
GCACTGTACTTAGCAGTGATTGATCGCATTGATATTAGAAAAGATAGCAATCACAAAAAACAGTTTTATGTAACACTCAA
ACTTGATAATGAAGTAATTAAACAGGTTTTCAATGATATTCCTCTCGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTT
TACCCCAACCTTTTTATTTAACAATATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

93.911

100

0.939