Detailed information NTG0883836

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: RNT94_RS11245
• Genome accession: NZ_CP134803
• Coordinates: 2285833..2287461 (-)
• Length: 542 a.a.
• NCBI ID: WP_031912428.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain SA85_2
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	2286003..2288832	2285833..2287461	flank	-1458

Gene organization within MGE regions

Location: 2285833..2288832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RNT94_RS11245	ccrB	2285833..2287461 (-)	1629	WP_031912428.1	cassette chromosome recombinase CcrB	Machinery gene
RNT94_RS11250	ccrA	2287483..2288832 (-)	1350	WP_031919601.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62313.25 Da
• Isoelectric Point: 9.6534

>NTDB_id=883836 RNT94_RS11245 WP_031912428.1 2285833..2287461(-) (ccrB) [Staphylococcus aureus strain SA85_2]
MNEMKKKRIGAYIRVSTERQVEGYSIDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKDLMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSASMSASTTVNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYDE
VQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITNQINQLKQQQSAPKTIYDANEIATILRHIFKNIETMDKAQLKA
LYLTVIDHIDIRKDEHHKKQFYVTLKLNHEIIKQLFHNTPLDEVQLSTSSLLLSQTLYLPIS

Nucleotide

• Length: 1629 bp

>NTDB_id=883836 RNT94_RS11245 WP_031912428.1 2285833..2287461(-) (ccrB) [Staphylococcus aureus strain SA85_2]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTATAGA
TGGTCAAATTACACAAATAGAGCAATTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGGGGTATTT
CTGGAAAATCTATGAATCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCTGACTTACTGACAATCGTCGAAGAACTACATCGTCAAAATGTTGAATT
TTTCAGCTTGTCTGAACGCATGGAAGTCAAAAATTCGACAGGTAAATTATTATTAAATATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCCTTAGAAGGCTATTACCAAGGTAATCTT
CCTTTAGGATATAATAACATACCAGATAATAAAAAAGATTTGATGATTAATCAGCATGAAGCTAATATTGTGAAATATAT
TTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCTTTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATCCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTATTAG
CCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTTCATGGTAAAGGAACCAATA
TTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGATGGT
ACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGTCAG
AGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATCGTTAAAAGTGACAAAGTTATCAAACAAGTCGTTG
AGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGATGAG
GTCCAAATCAAATTAGATAACTTGATCAAAACACTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGATTCA
TCAGTATGAAAAACAACTCAATGACATCACAAATCAAATCAATCAACTTAAGCAACAACAAAGTGCTCCCAAAACAATAT
ATGACGCTAATGAGATTGCAACTATATTACGTCATATATTCAAAAATATCGAAACCATGGATAAAGCACAACTCAAAGCA
CTATACCTTACGGTCATAGACCACATTGATATTCGTAAAGACGAACATCATAAAAAACAGTTCTACGTCACATTAAAACT
CAATCATGAAATCATTAAACAACTCTTCCATAATACCCCTCTCGACGAAGTGCAACTCAGCACTTCGTCTTTATTATTAT
CTCAAACACTCTATTTGCCTATCTCATAA

Domains

Predicted by InterproScan.

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-355)

• Resolvase, N terminal domain (Resolvase) (11-154)

• Recombinase (Recombinase) (179-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	77.491	100	0.775