Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RNT94_RS05225 Genome accession   NZ_CP134803
Coordinates   1090807..1091253 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA85_2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085807..1096253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT94_RS05195 gcvPA 1086733..1088079 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RNT94_RS05200 gcvT 1088099..1089190 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RNT94_RS05205 - 1089349..1089873 (-) 525 WP_001015120.1 shikimate kinase -
  RNT94_RS05210 - 1089863..1090009 (-) 147 WP_001789879.1 hypothetical protein -
  RNT94_RS05215 comGF 1090106..1090603 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  RNT94_RS05220 comGE 1090521..1090820 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RNT94_RS05225 comGD 1090807..1091253 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  RNT94_RS05230 comGC 1091231..1091542 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RNT94_RS05235 comGB 1091556..1092626 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  RNT94_RS05240 comGA 1092598..1093572 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RNT94_RS05245 - 1093624..1094247 (-) 624 WP_031919558.1 MBL fold metallo-hydrolase -
  RNT94_RS05250 - 1094244..1094573 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RNT94_RS05255 - 1094573..1095559 (-) 987 WP_000161315.1 ROK family glucokinase -
  RNT94_RS05260 - 1095556..1095759 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=883812 RNT94_RS05225 WP_001796473.1 1090807..1091253(-) (comGD) [Staphylococcus aureus strain SA85_2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=883812 RNT94_RS05225 WP_001796473.1 1090807..1091253(-) (comGD) [Staphylococcus aureus strain SA85_2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993