Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RNU01_RS09150 Genome accession   NZ_CP134801
Coordinates   1806743..1807729 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801743..1812729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS09125 - 1802003..1802350 (-) 348 WP_001242102.1 hypothetical protein -
  RNU01_RS09130 - 1802536..1803129 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  RNU01_RS09135 - 1803233..1803598 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RNU01_RS09140 yjbH 1803621..1804427 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  RNU01_RS09145 pepF 1804887..1806695 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RNU01_RS09150 coiA 1806743..1807729 (-) 987 WP_000959288.1 competence protein CoiA Machinery gene
  RNU01_RS09155 mecA 1807850..1808569 (-) 720 WP_001217728.1 adaptor protein MecA -
  RNU01_RS09160 spxA 1808941..1809336 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RNU01_RS09165 trpS 1809631..1810620 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RNU01_RS09170 opp4C 1810662..1811543 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  RNU01_RS09175 opp4B 1811555..1812517 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=883783 RNU01_RS09150 WP_000959288.1 1806743..1807729(-) (coiA) [Staphylococcus aureus strain SA73_2]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=883783 RNU01_RS09150 WP_000959288.1 1806743..1807729(-) (coiA) [Staphylococcus aureus strain SA73_2]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982