Detailed information NTG0883737

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RI132_RS12280
• Genome accession: NZ_CP134783
• Coordinates: 2664203..2665195 (-)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain GCU-01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2659203..2670195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI132_RS12260 (RI132_12260)	recX	2659232..2659693 (-)	462	WP_045596852.1	recombination regulator RecX	-
RI132_RS12265 (RI132_12265)	recA	2659796..2660845 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
RI132_RS12270 (RI132_12270)	pncC	2660979..2661482 (-)	504	WP_047108838.1	nicotinamide-nucleotide amidase	-
RI132_RS12275 (RI132_12275)	mutS	2661566..2664127 (+)	2562	WP_047108840.1	DNA mismatch repair protein MutS	-
RI132_RS12280 (RI132_12280)	rpoS	2664203..2665195 (-)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
RI132_RS12285 (RI132_12285)	-	2665276..2666172 (-)	897	WP_047108843.1	peptidoglycan DD-metalloendopeptidase family protein	-
RI132_RS12290 (RI132_12290)	-	2666216..2666842 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RI132_RS12295 (RI132_12295)	surE	2666845..2667612 (-)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
RI132_RS12300 (RI132_12300)	truD	2667618..2668661 (-)	1044	WP_047108848.1	tRNA pseudouridine(13) synthase TruD	-
RI132_RS12305 (RI132_12305)	ispF	2668697..2669173 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RI132_RS12310 (RI132_12310)	ispD	2669170..2669883 (-)	714	WP_047108851.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RI132_RS12315 (RI132_12315)	ftsB	2669883..2670164 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=883737 RI132_RS12280 WP_045596855.1 2664203..2665195(-) (rpoS) [Vibrio vulnificus strain GCU-01]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=883737 RI132_RS12280 WP_045596855.1 2664203..2665195(-) (rpoS) [Vibrio vulnificus strain GCU-01]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGAGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833