Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RI132_RS12160 Genome accession   NZ_CP134783
Coordinates   2642330..2642848 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain GCU-01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637330..2647848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS12135 (RI132_12135) rimM 2637399..2637947 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  RI132_RS12140 (RI132_12140) rpsP 2637963..2638211 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  RI132_RS12145 (RI132_12145) ffh 2638493..2639869 (-) 1377 WP_011079540.1 signal recognition particle protein -
  RI132_RS12150 (RI132_12150) - 2640083..2640877 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  RI132_RS12155 (RI132_12155) - 2640964..2642241 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  RI132_RS12160 (RI132_12160) luxS 2642330..2642848 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  RI132_RS12165 (RI132_12165) - 2642899..2643504 (-) 606 WP_224655350.1 hypothetical protein -
  RI132_RS12170 (RI132_12170) gshA 2643542..2645107 (-) 1566 WP_047108898.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=883734 RI132_RS12160 WP_011079537.1 2642330..2642848(-) (luxS) [Vibrio vulnificus strain GCU-01]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=883734 RI132_RS12160 WP_011079537.1 2642330..2642848(-) (luxS) [Vibrio vulnificus strain GCU-01]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866