Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RI132_RS06550 Genome accession   NZ_CP134783
Coordinates   1417688..1419109 (-) Length   473 a.a.
NCBI ID   WP_013571949.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412688..1424109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS06520 (RI132_06520) - 1413095..1413862 (+) 768 WP_011080632.1 phospholipase A -
  RI132_RS06525 (RI132_06525) - 1414101..1414505 (+) 405 WP_011080631.1 hypothetical protein -
  RI132_RS06530 (RI132_06530) - 1414579..1415682 (-) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RI132_RS06535 (RI132_06535) - 1415885..1416277 (-) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  RI132_RS06540 (RI132_06540) - 1416590..1417267 (-) 678 WP_130190886.1 LrgB family protein -
  RI132_RS06545 (RI132_06545) - 1417270..1417641 (-) 372 WP_011080627.1 CidA/LrgA family protein -
  RI132_RS06550 (RI132_06550) sbcB 1417688..1419109 (-) 1422 WP_013571949.1 exodeoxyribonuclease I Machinery gene
  RI132_RS06555 (RI132_06555) - 1419183..1419881 (-) 699 WP_047109137.1 oxidoreductase -
  RI132_RS06560 (RI132_06560) cobT 1420418..1421446 (+) 1029 WP_047109138.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  RI132_RS06565 (RI132_06565) - 1421448..1422215 (+) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  RI132_RS06570 (RI132_06570) cobU 1422218..1422778 (+) 561 WP_045620120.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RI132_RS06575 (RI132_06575) cobC 1422788..1423426 (+) 639 WP_039553421.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54727.96 Da        Isoelectric Point: 5.1722

>NTDB_id=883725 RI132_RS06550 WP_013571949.1 1417688..1419109(-) (sbcB) [Vibrio vulnificus strain GCU-01]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=883725 RI132_RS06550 WP_013571949.1 1417688..1419109(-) (sbcB) [Vibrio vulnificus strain GCU-01]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAACTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGCGTAGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803