Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   RND59_RS19100 Genome accession   NZ_CP134781
Coordinates   754088..755263 (+) Length   391 a.a.
NCBI ID   WP_311846836.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 749088..760263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS19090 (RND59_19090) - 749423..750565 (+) 1143 WP_311846834.1 efflux RND transporter periplasmic adaptor subunit -
  RND59_RS19095 (RND59_19095) - 750569..753643 (+) 3075 WP_311846835.1 efflux RND transporter permease subunit -
  RND59_RS19100 (RND59_19100) cqsA 754088..755263 (+) 1176 WP_311846836.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  RND59_RS19105 (RND59_19105) - 755321..757102 (-) 1782 WP_311846837.1 hybrid sensor histidine kinase/response regulator -
  RND59_RS19110 (RND59_19110) - 757916..758200 (+) 285 Protein_674 type VI secretion system PAAR protein -
  RND59_RS19115 (RND59_19115) - 759039..759470 (+) 432 WP_311846838.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43926.07 Da        Isoelectric Point: 6.0820

>NTDB_id=883685 RND59_RS19100 WP_311846836.1 754088..755263(+) (cqsA) [Vibrio ruber strain HNIBRBA4764]
MNSISKNLPDFIQSKINFHIRDLIESNNNGKHLVLGKRPNNKDIVMQSNDYLCLANNSMIKSQMIDSIMRMDDSILMSAI
YLQDEDSKPSIEHRLSEFTNFDSCLLSQSGWNANIGLLQAICSPETNVYIDFFTHMSIWEGARYANAKVHPFMHNNMKHL
RKLIKRNGPGIIAVDSIYSTLGTIAPLRELVDIAKEFGCVTVIDESHSLGIYGTHGAGLIEELNLSKEVDFMTASLAKSF
AYRAGAIWANNNVNQCIPFVSYPAIFSSALLPYDIDTLGAILDSIYDSDDKRHHLFYLSDKLRKGLTKIGIKVRSQSQIV
SLETGGEENTELVRDYLEDNGVFGAVFCRPATPKNSNLIRFSLNSSLTDYDIDKILSVCHTLVEDEKVYFK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=883685 RND59_RS19100 WP_311846836.1 754088..755263(+) (cqsA) [Vibrio ruber strain HNIBRBA4764]
ATGAACAGTATTAGTAAAAATTTACCAGATTTCATTCAGTCAAAAATAAATTTTCATATTCGTGACTTAATTGAATCTAA
TAATAATGGGAAACATCTTGTTTTAGGCAAACGTCCCAATAACAAAGATATTGTGATGCAAAGTAATGATTACTTATGTT
TGGCAAATAATAGCATGATAAAAAGTCAAATGATCGACTCAATTATGAGAATGGATGATAGTATTTTGATGTCTGCTATT
TATTTACAAGATGAAGATTCGAAACCGTCTATAGAACACCGGCTTTCGGAATTTACTAACTTTGATAGTTGTTTACTCTC
ACAATCAGGGTGGAATGCTAATATTGGATTATTACAGGCGATTTGTTCACCAGAGACCAATGTCTATATTGATTTTTTCA
CTCATATGTCAATATGGGAAGGGGCTCGATATGCGAATGCGAAAGTTCATCCATTTATGCATAATAACATGAAACATTTA
CGGAAATTGATTAAAAGAAATGGTCCGGGGATTATTGCTGTTGATTCGATATACAGTACATTAGGTACGATTGCGCCATT
GAGAGAGTTGGTTGATATTGCAAAAGAGTTTGGTTGTGTAACGGTCATTGATGAATCGCATTCTCTTGGTATCTATGGCA
CACATGGTGCGGGTCTGATTGAGGAGTTGAATTTATCAAAAGAGGTTGATTTTATGACTGCGAGTTTAGCAAAATCCTTT
GCATATAGAGCTGGTGCGATATGGGCAAATAATAATGTTAATCAGTGTATACCTTTTGTTAGTTATCCAGCGATATTTAG
TTCTGCTCTATTACCCTATGATATCGATACACTCGGTGCCATATTGGATTCGATATATGATTCAGATGATAAAAGGCATC
ATCTTTTTTATCTTTCTGATAAATTAAGAAAAGGACTCACAAAAATCGGAATTAAAGTTAGAAGTCAGTCTCAGATTGTA
TCACTAGAAACCGGGGGTGAAGAGAATACAGAATTAGTTCGTGATTATCTAGAGGATAATGGGGTTTTTGGGGCAGTTTT
TTGTCGGCCAGCTACACCTAAAAATAGTAATTTAATTCGGTTTTCTTTAAATAGTTCTCTGACAGATTATGATATTGATA
AAATATTGTCAGTCTGCCACACATTAGTAGAAGATGAAAAAGTATATTTTAAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.281

98.21

0.621