Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   RND59_RS15780 Genome accession   NZ_CP134781
Coordinates   12040..13125 (-) Length   361 a.a.
NCBI ID   WP_311847061.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 7040..18125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS15765 (RND59_15765) - 7156..8631 (-) 1476 WP_311847059.1 cobyric acid synthase -
  RND59_RS15770 (RND59_15770) - 8808..9335 (+) 528 WP_077333486.1 hypothetical protein -
  RND59_RS15775 (RND59_15775) luxQ 9413..11998 (-) 2586 WP_311847060.1 LuxQ periplasmic sensor domain-containing protein Regulator
  RND59_RS15780 (RND59_15780) luxP 12040..13125 (-) 1086 WP_311847061.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  RND59_RS15785 (RND59_15785) traF 13204..14349 (-) 1146 WP_077337560.1 conjugal transfer protein TraF -
  RND59_RS15790 (RND59_15790) - 14425..14715 (-) 291 WP_077337561.1 GIY-YIG nuclease family protein -
  RND59_RS15795 (RND59_15795) - 14722..15372 (-) 651 WP_311847062.1 DUF480 domain-containing protein -
  RND59_RS15800 (RND59_15800) - 15431..15628 (-) 198 WP_311847063.1 hypothetical protein -
  RND59_RS15805 (RND59_15805) - 15854..16171 (+) 318 WP_074371103.1 DUF496 family protein -
  RND59_RS15810 (RND59_15810) - 16377..16850 (+) 474 WP_077337564.1 peroxiredoxin -
  RND59_RS15815 (RND59_15815) - 16950..17366 (-) 417 WP_311847064.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41443.22 Da        Isoelectric Point: 6.7796

>NTDB_id=883684 RND59_RS15780 WP_311847061.1 12040..13125(-) (luxP) [Vibrio ruber strain HNIBRBA4764]
MRLFGVILTTCFFLVYHSAAYALSGYWHYNEYLDLNPDQKQLTLSLANAVRLEPKPLQATQENPVKISVIYPGQQVSDYW
SRNIRAFELRLNELGVKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHKKFIEHVLRGGETKLIIQNVTT
PVKDWAHRQPWMYIGFDHEIGTSLLVDYFKKTLKPHSPYSVLYFSQGYVSAARGDTFIQAMTEYPLVSSFYTQANQESAY
KITLENMREHPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEALQHHDLNVTVMRMNDDTGVAMAEAIKW
DLEGKKVPTVYSGDFEVVSSEDKPDRIEALKQRAFRYSDRH

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=883684 RND59_RS15780 WP_311847061.1 12040..13125(-) (luxP) [Vibrio ruber strain HNIBRBA4764]
ATGAGACTTTTTGGAGTTATTTTAACCACCTGCTTTTTTCTTGTTTATCACTCAGCAGCTTACGCATTAAGTGGTTACTG
GCATTACAACGAATATCTTGATTTAAATCCGGATCAAAAACAACTGACACTCTCTTTAGCAAATGCGGTTCGGCTTGAGC
CGAAGCCATTACAGGCGACGCAGGAAAATCCGGTAAAAATATCGGTGATTTATCCCGGGCAGCAAGTATCGGACTATTGG
AGCCGTAATATCCGAGCCTTTGAATTGCGTTTAAATGAACTTGGGGTCAAGTATGAAATCCATCAGGTATTTACCCGGCC
GAATCTGGATATCCGCCAACAAAGTCTCTCTTTGATGGAGGCATTAAAAAATAAATCCGACTATTTGATTTTTACGCTTG
ATACCACCAGACACAAAAAATTTATTGAACATGTGTTAAGAGGCGGAGAGACCAAACTGATTATCCAGAATGTGACTACA
CCAGTGAAAGACTGGGCACACCGACAACCATGGATGTATATCGGTTTTGATCATGAAATAGGAACCAGTTTGCTGGTGGA
CTATTTTAAGAAGACATTAAAGCCCCATTCACCTTATTCCGTATTGTATTTTTCTCAAGGCTATGTGAGCGCTGCCCGGG
GCGATACGTTTATTCAAGCAATGACTGAATATCCGCTTGTATCGTCATTTTATACCCAGGCTAATCAGGAGAGTGCTTAT
AAAATCACGCTTGAGAATATGAGAGAACATCCGGAGATTAAATTATTGTATGCCTGTTCAACCGATGTTGCTCTCGGGGC
AGTCAAAGCATTGAAAGAGCTGGGCCGGGAAGATGTTCTTATCAATGGTTGGGGTGGCGGTTCAGCCGAGCTGGAGGCTT
TGCAGCATCATGATTTGAATGTCACAGTGATGCGAATGAATGATGACACCGGTGTCGCAATGGCCGAAGCCATCAAGTGG
GATCTTGAAGGTAAAAAAGTACCGACGGTTTATTCCGGAGACTTTGAAGTTGTATCCAGTGAAGATAAGCCTGATAGAAT
TGAGGCGTTGAAACAGCGTGCATTCCGATATTCTGATCGACACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(67-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

66.57

95.291

0.634