Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RND59_RS09405 Genome accession   NZ_CP134780
Coordinates   2063938..2064456 (+) Length   172 a.a.
NCBI ID   WP_077334784.1    Uniprot ID   A0A1R4LH54
Organism   Vibrio ruber strain HNIBRBA4764     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058938..2069456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS09395 (RND59_09395) - 2059234..2062077 (+) 2844 WP_311844417.1 pitrilysin family protein -
  RND59_RS09400 (RND59_09400) gshA 2062176..2063780 (+) 1605 WP_311844419.1 glutamate--cysteine ligase -
  RND59_RS09405 (RND59_09405) luxS 2063938..2064456 (+) 519 WP_077334784.1 S-ribosylhomocysteine lyase Regulator
  RND59_RS09410 (RND59_09410) - 2064550..2065824 (-) 1275 WP_077334786.1 HlyC/CorC family transporter -
  RND59_RS09415 (RND59_09415) - 2065909..2066703 (-) 795 WP_311844421.1 inner membrane protein YpjD -
  RND59_RS09420 (RND59_09420) ffh 2066957..2068327 (+) 1371 WP_077334788.1 signal recognition particle protein -
  RND59_RS09425 (RND59_09425) rpsP 2068504..2068752 (+) 249 WP_074371838.1 30S ribosomal protein S16 -
  RND59_RS09430 (RND59_09430) rimM 2068775..2069329 (+) 555 WP_077334790.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18869.62 Da        Isoelectric Point: 4.5544

>NTDB_id=883675 RND59_RS09405 WP_077334784.1 2063938..2064456(+) (luxS) [Vibrio ruber strain HNIBRBA4764]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGDGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLGEAKEIAQTVIASGISVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=883675 RND59_RS09405 WP_077334784.1 2063938..2064456(+) (luxS) [Vibrio ruber strain HNIBRBA4764]
ATGCCATTATTAGATAGTTTTACAGTGGATCATACACGGATGAATGCACCAGCCGTTCGTGTTGCTAAAACCATGAATAC
CCCCAAAGGGGATACGATCACGGTGTTTGATTTACGCTTTACTGTCCCGAATCAAGATATCCTTTCAGAGAAAGGTATTC
ATACACTCGAGCACCTATTTGCAGGCTTTATGAGAGCGCATCTCAATGGTGACGGTGTTGAAATCATTGATATCTCTCCT
ATGGGATGCCGGACAGGTTTTTACATGAGCTTGATTGGTGTACCTTCTGAGCAGCGGGTTGCGGATGCCTGGCTGGCAGC
AATGCAGGATGTTTTGAAGGTTGAAGACCAGAACAAAATCCCAGAATTAAATATTTATCAATGCGGTACCGCAGCCATGC
ACTCTTTGGGTGAAGCGAAAGAGATTGCCCAAACGGTTATTGCAAGTGGTATTAGTGTCAACCAGAACGATGATCTGGCG
CTACCTGAATCGATGCTTCAGGAACTGAAAGTAGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LH54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855