Detailed information NTG0883672

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RND59_RS09205
• Genome accession: NZ_CP134780
• Coordinates: 2017293..2018279 (+)
• Length: 328 a.a.
• NCBI ID: WP_311844377.1
• Uniprot ID: -
• Organism: Vibrio ruber strain HNIBRBA4764
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2012293..2023279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RND59_RS09170 (RND59_09170)	ftsB	2012327..2012608 (+)	282	WP_077334703.1	cell division protein FtsB	-
RND59_RS09175 (RND59_09175)	ispD	2012609..2013304 (+)	696	WP_311844370.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RND59_RS09180 (RND59_09180)	ispF	2013325..2013798 (+)	474	WP_311844372.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RND59_RS09185 (RND59_09185)	truD	2013878..2014924 (+)	1047	WP_311844374.1	tRNA pseudouridine(13) synthase TruD	-
RND59_RS09190 (RND59_09190)	surE	2014928..2015668 (+)	741	WP_077334711.1	5'/3'-nucleotidase SurE	-
RND59_RS09195 (RND59_09195)	-	2015674..2016300 (+)	627	WP_311844375.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RND59_RS09200 (RND59_09200)	-	2016303..2017211 (+)	909	WP_311844376.1	peptidoglycan DD-metalloendopeptidase family protein	-
RND59_RS09205 (RND59_09205)	rpoS	2017293..2018279 (+)	987	WP_311844377.1	RNA polymerase sigma factor RpoS	Regulator
RND59_RS09210 (RND59_09210)	-	2018374..2019423 (-)	1050	WP_311844379.1	pectate lyase	-
RND59_RS09215 (RND59_09215)	-	2019776..2021833 (-)	2058	WP_311844380.1	ATP-binding protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37579.42 Da
• Isoelectric Point: 4.6440

>NTDB_id=883672 RND59_RS09205 WP_311844377.1 2017293..2018279(+) (rpoS) [Vibrio ruber strain HNIBRBA4764]
MSKSNSVTKVDQFDFDSEAFDLNTLGSEVSSDSVSVGTREEYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIALELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESDE

Nucleotide

• Length: 987 bp

>NTDB_id=883672 RND59_RS09205 WP_311844377.1 2017293..2018279(+) (rpoS) [Vibrio ruber strain HNIBRBA4764]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGAAGCATTTGATCTCAATACATTGGGTAG
TGAGGTCAGTTCTGATTCTGTATCCGTCGGAACTCGGGAAGAATATGAAGTTACTTCCAAGAGCTTAGACGCGACTCAAC
TCTATTTAGGCGAAATCGGTTTTTCTCCTTTGTTAACCGCAGAGGAAGAAATCTTGTACGCACGCCGGGCTCTCCGGGGT
GATGAAGCCGCTCGTAAACGGATGATTGAGAGTAATCTACGTCTCGTTGTCAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTGATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCTGAAAGAGGAT
TTCGCTTTTCTACGTATGCAACTTGGTGGATCCGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATTCACGTTGTCAAAGAACTTAATATTTATCTACGTACAGCACGTGAGTTGTCACAGAAGTTAGACCATGAACC
AACAGCGGAAGATATTGCACTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGTCTGAACGAACGTATTA
GTTCTGTTGATACGCCTATTGGTGGTGATGGTGATAAAGCATTACTGGATATCATTCCAGATGCGAAACACTATGATCCA
GAATATTCGACAGAAGATGATGATATCAAGTCTTCGCTCTTACATTGGCTAGATGAACTGAATCCGAAACAAAAAGAAGT
GTTGGCAAGACGTTTTGGTTTGCTCGGATATGAACCATCTACTTTGGAAGAAGTAGGAAAAGAGATCAATTTAACACGTG
AGCGAGTTCGTCAAATCCAAGTCGAAGGGCTGCGTCGTTTGAGAGAAATTCTACTGAAACAAGGCTTGAACATGGAGTCT
TTGTTTGATGTAGAGAGTGATGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.934	100	0.845