Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   RND59_RS04810 Genome accession   NZ_CP134780
Coordinates   1032050..1033054 (-) Length   334 a.a.
NCBI ID   WP_077336270.1    Uniprot ID   A0A1R4LLE8
Organism   Vibrio ruber strain HNIBRBA4764     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027050..1038054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS04785 (RND59_04785) rraA 1027637..1028200 (-) 564 WP_311846210.1 ribonuclease E activity regulator RraA -
  RND59_RS04790 (RND59_04790) - 1028276..1029193 (-) 918 WP_077336274.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  RND59_RS04795 (RND59_04795) hslU 1029339..1030670 (-) 1332 WP_311846211.1 HslU--HslV peptidase ATPase subunit -
  RND59_RS04800 (RND59_04800) hslV 1030715..1031254 (-) 540 WP_077336272.1 ATP-dependent protease subunit HslV -
  RND59_RS04805 (RND59_04805) ftsN 1031396..1031944 (-) 549 WP_311846212.1 cell division protein FtsN -
  RND59_RS04810 (RND59_04810) cytR 1032050..1033054 (-) 1005 WP_077336270.1 DNA-binding transcriptional regulator CytR Regulator
  RND59_RS04815 (RND59_04815) priA 1033304..1035508 (-) 2205 WP_311846213.1 primosomal protein N' -
  RND59_RS04820 (RND59_04820) rpmE 1035760..1035981 (+) 222 WP_077336269.1 50S ribosomal protein L31 -
  RND59_RS04825 (RND59_04825) - 1036284..1037561 (+) 1278 WP_311846214.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36664.20 Da        Isoelectric Point: 6.4970

>NTDB_id=883661 RND59_RS04810 WP_077336270.1 1032050..1033054(-) (cytR) [Vibrio ruber strain HNIBRBA4764]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHQKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSDPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=883661 RND59_RS04810 WP_077336270.1 1032050..1033054(-) (cytR) [Vibrio ruber strain HNIBRBA4764]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCGACGACAAGAAAGCGGGTTGAAGATGCAGTGCTTGAAGCCGGATATTCTCCGAATTCACTGGCACGTAATT
TAAGACGTAACGAATCAAAGACGATTGTTGCGATTGTTCCCGATATTTGTGACCCGTATTTTACTGAAATTATTCGGGGC
ATTGAGGATGCAGCCGTCGAGCATGGTTACTTGGTGCTACTGGGTGACAGCGGACAACAGAAAAAACGCGAAAGCTCCTT
TGTCAATCTGGTCTTTACCAAGCAAGCTGACGGAATGCTGCTACTGGGAACCGATTTACCGTTTGATGCCAGTAAGTCTG
AACAGAAAAACCTACCGCCGATGGTGATGGCCTGTGAGTACGCGCCGGAACTGGAGCTGCCGACAGTCCATATTGATAAT
CTGACTTCTGCATTTGAAGTAGTGAATTATCTCACTCAGATGGGACACCAAAAAATTGGTGAAATTGCCGGCCCCGATTC
AGCAGCGTTGTGTCATTTCCGTCATCAGGGATATATGCAGGCGCTCCGACGTGCCGGAATAACCATGAATCCTGCTTATC
ATTATAAAGGTGATTTCAGTTTTGAAGCCGGCGTGAAAGCGATTCGGCTCCTTTTGGGGTTGTCTGATCCGCCGGGAGCG
GTTTTCTGCCACAATGACATGATGGCTATCGGTGCGATTCAAGAAGCAAAGCGTCTGGGCGTCAGAGTCCCTCAGGATCT
GTCGGTGGTTGGTTTTGACGATATTAACTTTGCACAATATTGTGATCCACCGTTAACCACCGTGTCCCAGCCCCGGTATG
AGATTGGTCGTCAGGCGATGCTGATGATGTTGGAAGTACTTCGGGGACACGATGTTCGGGCCGGCTCGCGTTTGCTGGAA
ACAAAACTGGTGATTCGTGAAAGTGTTGCTGCTCCTCGTGGGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LLE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.048

99.401

0.865
  cytR Vibrio parahaemolyticus RIMD 2210633

84.384

99.701

0.841