Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RND59_RS01070 Genome accession   NZ_CP134780
Coordinates   214714..216114 (-) Length   466 a.a.
NCBI ID   WP_077336063.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 209714..221114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS01030 (RND59_01030) - 209752..210168 (-) 417 WP_077336050.1 CBS domain-containing protein -
  RND59_RS01035 (RND59_01035) moaE 210346..210798 (-) 453 WP_311845509.1 molybdopterin synthase catalytic subunit MoaE -
  RND59_RS01040 (RND59_01040) moaD 210800..211045 (-) 246 WP_077336054.1 molybdopterin synthase sulfur carrier subunit -
  RND59_RS01045 (RND59_01045) moaC 211042..211521 (-) 480 WP_077336056.1 cyclic pyranopterin monophosphate synthase MoaC -
  RND59_RS01050 (RND59_01050) moaB 211540..212046 (-) 507 WP_077336058.1 molybdenum cofactor biosynthesis protein B -
  RND59_RS01055 (RND59_01055) moaA 212101..213084 (-) 984 WP_311845511.1 GTP 3',8-cyclase MoaA -
  RND59_RS01060 (RND59_01060) yvcK 213390..214328 (+) 939 WP_311846584.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  RND59_RS01065 (RND59_01065) luxU 214361..214711 (-) 351 WP_311845512.1 quorum-sensing phosphorelay protein LuxU -
  RND59_RS01070 (RND59_01070) luxO 214714..216114 (-) 1401 WP_077336063.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RND59_RS01075 (RND59_01075) uvrB 216376..218406 (-) 2031 WP_311845513.1 excinuclease ABC subunit UvrB -
  RND59_RS01085 (RND59_01085) - 219169..220050 (-) 882 WP_311845514.1 LysR family transcriptional regulator -
  RND59_RS01090 (RND59_01090) budA 220147..220932 (+) 786 WP_077336071.1 acetolactate decarboxylase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52480.06 Da        Isoelectric Point: 5.0303

>NTDB_id=883656 RND59_RS01070 WP_077336063.1 214714..216114(-) (luxO) [Vibrio ruber strain HNIBRBA4764]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEDRKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEENA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=883656 RND59_RS01070 WP_077336063.1 214714..216114(-) (luxO) [Vibrio ruber strain HNIBRBA4764]
ATGCAATCTGAACAGTTACCACAAAAAAGTAGATATCTGCTGATGGTTGAAGATACAGCCTCGGTTGCCGTGCTGTATCG
AACCTACCTTGAGCCTCTGGATATTGACATCAATATTGTCGGTACCGGGAAAGAGGCATTGGAGAGTCTTGAAAAAAGAG
AACCCGATCTGATACTGCTTGATTTACGTCTTCCGGATATGACAGGGATGGATGTTTTACACGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTTATTTTTATGACAGCTCACGGCTCAATCGATACGGCTGTCGAAGCCATGCGCTATGGTGCTCAGGA
TTTTTTAATTAAACCATGCGAAGCTGACCGATTACGTGTCACGGTGAATAATGCAATTCGCAAAGCTTCAAAAATTAAAA
GTGATTCTGATGATCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCTGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATCTTTATAACCGGAGAAAGTGGCACCGGTAAAGAGGTGTGTGCTGAAGC
CATTCATGCTGCCAGCCGACGAGGTGATAAACCTTTCATTGCCATTAACTGTGCCGCGATTCCGAAAGATCTGATTGAAA
GTGAGCTGTTCGGTCATGTCAAAGGTGCTTTTACGGGGGCCGCGACTGATCGGCAGGGTGCTGCCGAGCTTGCTGATGGC
GGGACGCTATTTCTGGATGAGCTCTGTGAGATGGATTTGGACTTACAGACGAAATTATTGCGCTTTATCCAAACAGGTAC
ATTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTGTGTGCAACAAACCGTGATCCGTGGAAAG
AAGTTCAGGAAGGACGTTTCCGGGAAGATTTGTACTATCGTTTATATGTTATCCCACTTCATTTGCCGCCACTTCGGGAA
CGGGGTGATGATGTCATCGAAATCGCTTACTCTTTACTCGGATATATGTCCAAAGAAGAAGAGAAAGATTTTGTTCGTCT
TGCTGCTGAAGTTGTGGAACGGTTCAGACAGTACGAGTGGCCGGGCAATGTTCGCCAGTTACAAAACGTTTTACGTAATG
TGGTTGTATTGAATCAGGGTAAAGAAATCACGCTGAGCATGTTACCACCGCCGTTGAATCAGCCGAAAGAAAGCTATCTT
CGTTTGGTTCAACCGATGATGGAAGATCGGAAACCTTCAGTCCATGAAATATTTCCCCTATGGATGACGGAAAAAATGGC
AATCGAAAATGCGATTGATGCATGTGAAGGCAATATCCCGAAAGCAGCTGGCTATTTAGAAGTAAGCCCTTCAACCATTT
ATCGTAAATTACAATCTTGGAATGCAGAAGAGAACGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.248

95.923

0.837