Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RNI18_RS17545 Genome accession   NZ_CP134775
Coordinates   3498787..3499539 (+) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493787..3504539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS17530 (RNI18_17530) - 3494010..3494201 (-) 192 WP_003152639.1 hypothetical protein -
  RNI18_RS17535 (RNI18_17535) - 3494654..3497296 (+) 2643 WP_014305516.1 valine--tRNA ligase -
  RNI18_RS17540 (RNI18_17540) - 3497355..3498647 (+) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RNI18_RS17545 (RNI18_17545) comC 3498787..3499539 (+) 753 WP_044053500.1 A24 family peptidase Machinery gene
  RNI18_RS17550 (RNI18_17550) - 3499666..3500667 (+) 1002 WP_046559966.1 SPOR domain-containing protein -
  RNI18_RS17555 (RNI18_17555) - 3500808..3501377 (+) 570 WP_003152645.1 nucleoside triphosphate pyrophosphatase -
  RNI18_RS17560 (RNI18_17560) radC 3501409..3502104 (+) 696 WP_003152646.1 DNA repair protein RadC -
  RNI18_RS17565 (RNI18_17565) mreB 3502196..3503209 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  RNI18_RS17570 (RNI18_17570) mreC 3503240..3504103 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=883608 RNI18_RS17545 WP_044053500.1 3498787..3499539(+) (comC) [Bacillus velezensis strain KB21]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=883608 RNI18_RS17545 WP_044053500.1 3498787..3499539(+) (comC) [Bacillus velezensis strain KB21]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGTTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584