Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   RNI18_RS15700 Genome accession   NZ_CP134775
Coordinates   3141843..3141983 (+) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain KB21     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3136843..3146983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS15675 (RNI18_15675) - 3137149..3137547 (+) 399 WP_003152031.1 YueI family protein -
  RNI18_RS15680 (RNI18_15680) - 3137644..3138195 (+) 552 WP_003152033.1 cysteine hydrolase family protein -
  RNI18_RS15685 (RNI18_15685) - 3138213..3139679 (+) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  RNI18_RS15690 (RNI18_15690) - 3139809..3141029 (+) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  RNI18_RS15695 (RNI18_15695) - 3141036..3141377 (-) 342 WP_046560014.1 hypothetical protein -
  RNI18_RS15700 (RNI18_15700) degQ 3141843..3141983 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RNI18_RS15705 (RNI18_15705) comQ 3142168..3143100 (+) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  RNI18_RS15715 (RNI18_15715) comP 3143253..3145556 (+) 2304 WP_003152050.1 histidine kinase Regulator
  RNI18_RS15720 (RNI18_15720) comA 3145637..3146281 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  RNI18_RS15725 (RNI18_15725) - 3146303..3146686 (+) 384 WP_003152054.1 hotdog fold thioesterase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=883600 RNI18_RS15700 WP_003152043.1 3141843..3141983(+) (degQ) [Bacillus velezensis strain KB21]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=883600 RNI18_RS15700 WP_003152043.1 3141843..3141983(+) (degQ) [Bacillus velezensis strain KB21]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891