Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RNI18_RS10865 Genome accession   NZ_CP134775
Coordinates   2196121..2196411 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191121..2201411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS10850 (RNI18_10850) - 2191344..2192669 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  RNI18_RS10855 (RNI18_10855) - 2192804..2193571 (-) 768 WP_041481816.1 TatD family hydrolase -
  RNI18_RS10860 (RNI18_10860) metG 2193647..2195638 (-) 1992 WP_014304193.1 methionine--tRNA ligase -
  RNI18_RS10865 (RNI18_10865) abrB 2196121..2196411 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RNI18_RS10870 (RNI18_10870) rsmI 2196461..2197342 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RNI18_RS10875 (RNI18_10875) - 2197317..2197616 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  RNI18_RS10880 (RNI18_10880) - 2197603..2198346 (-) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RNI18_RS10885 (RNI18_10885) yabA 2198406..2198765 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  RNI18_RS10890 (RNI18_10890) ricT 2198780..2199607 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RNI18_RS10895 (RNI18_10895) holB 2199610..2200599 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  RNI18_RS10900 (RNI18_10900) - 2200611..2201051 (-) 441 WP_004264730.1 YaaR family protein -
  RNI18_RS10905 (RNI18_10905) darA 2201064..2201393 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=883584 RNI18_RS10865 WP_169510469.1 2196121..2196411(+) (abrB) [Bacillus velezensis strain KB21]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=883584 RNI18_RS10865 WP_169510469.1 2196121..2196411(+) (abrB) [Bacillus velezensis strain KB21]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979