Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RNI18_RS03970 Genome accession   NZ_CP134775
Coordinates   877216..877812 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 872216..882812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS03945 (RNI18_03945) mobB 872592..873113 (-) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  RNI18_RS03950 (RNI18_03950) glp 873074..874366 (-) 1293 WP_088005373.1 gephyrin-like molybdotransferase Glp -
  RNI18_RS03955 (RNI18_03955) - 874384..875403 (-) 1020 WP_069013468.1 molybdopterin-synthase adenylyltransferase MoeB -
  RNI18_RS03960 (RNI18_03960) - 875455..876057 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  RNI18_RS03965 (RNI18_03965) - 876203..877195 (+) 993 WP_046559552.1 hypothetical protein -
  RNI18_RS03970 (RNI18_03970) rok 877216..877812 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  RNI18_RS03975 (RNI18_03975) - 878264..878722 (-) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  RNI18_RS03980 (RNI18_03980) - 879010..879816 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  RNI18_RS03985 (RNI18_03985) - 879850..880095 (-) 246 WP_003154596.1 YkuS family protein -
  RNI18_RS03990 (RNI18_03990) - 880156..881280 (-) 1125 WP_046559551.1 N-acetyldiaminopimelate deacetylase -
  RNI18_RS03995 (RNI18_03995) dapD 881350..882060 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RNI18_RS04000 (RNI18_04000) - 882142..882597 (-) 456 WP_003154599.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=883556 RNI18_RS03970 WP_003154591.1 877216..877812(-) (rok) [Bacillus velezensis strain KB21]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=883556 RNI18_RS03970 WP_003154591.1 877216..877812(-) (rok) [Bacillus velezensis strain KB21]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843