Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RMV19_RS07795 Genome accession   NZ_CP134773
Coordinates   1704457..1705092 (+) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. VD-NE white     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1699457..1710092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV19_RS07775 - 1699610..1700542 (+) 933 WP_102900039.1 ABC transporter ATP-binding protein -
  RMV19_RS07780 - 1700539..1701318 (+) 780 WP_008087860.1 ABC transporter permease -
  RMV19_RS07785 - 1701466..1701984 (-) 519 WP_034155370.1 DUF2062 domain-containing protein -
  RMV19_RS07790 comA 1702121..1704355 (+) 2235 WP_311882466.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMV19_RS07795 exbB 1704457..1705092 (+) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMV19_RS07800 - 1705089..1705517 (+) 429 WP_007908223.1 ExbD/TolR family protein -
  RMV19_RS07805 lpxK 1705517..1706527 (+) 1011 WP_311882461.1 tetraacyldisaccharide 4'-kinase -
  RMV19_RS07810 - 1706549..1706734 (+) 186 WP_003174668.1 Trm112 family protein -
  RMV19_RS07815 kdsB 1706731..1707495 (+) 765 WP_034155367.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMV19_RS07820 - 1707495..1707959 (+) 465 WP_311882458.1 low molecular weight protein-tyrosine-phosphatase -
  RMV19_RS07825 murB 1707956..1708975 (+) 1020 WP_311882456.1 UDP-N-acetylmuramate dehydrogenase -
  RMV19_RS07830 - 1709288..1709758 (+) 471 WP_311882454.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=883509 RMV19_RS07795 WP_007908216.1 1704457..1705092(+) (exbB) [Pseudomonas sp. VD-NE white]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=883509 RMV19_RS07795 WP_007908216.1 1704457..1705092(+) (exbB) [Pseudomonas sp. VD-NE white]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATTGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCACGAACTCGAGCGCTACGT
TAACGCGCTAGGCACGATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GCGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGATCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848