Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RMV19_RS01800 Genome accession   NZ_CP134773
Coordinates   375997..376401 (+) Length   134 a.a.
NCBI ID   WP_007913673.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE white     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 370997..381401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV19_RS01770 - 371005..372009 (-) 1005 WP_007913665.1 aspartate carbamoyltransferase catalytic subunit -
  RMV19_RS01775 pyrR 372037..372543 (-) 507 WP_016985973.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RMV19_RS01780 ruvX 372624..373061 (-) 438 WP_064589634.1 Holliday junction resolvase RuvX -
  RMV19_RS01785 - 373061..373633 (-) 573 WP_016985971.1 YqgE/AlgH family protein -
  RMV19_RS01790 - 373793..374692 (-) 900 WP_038358807.1 energy transducer TonB -
  RMV19_RS01795 gshB 374800..375771 (-) 972 WP_311884013.1 glutathione synthase -
  RMV19_RS01800 pilG 375997..376401 (+) 405 WP_007913673.1 twitching motility response regulator PilG Regulator
  RMV19_RS01805 pilH 376462..376827 (+) 366 WP_026000666.1 twitching motility response regulator PilH -
  RMV19_RS01810 - 376838..377377 (+) 540 WP_311884008.1 chemotaxis protein CheW -
  RMV19_RS01815 - 377532..379580 (+) 2049 WP_034153650.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14592.99 Da        Isoelectric Point: 7.1346

>NTDB_id=883497 RMV19_RS01800 WP_007913673.1 375997..376401(+) (pilG) [Pseudomonas sp. VD-NE white]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=883497 RMV19_RS01800 WP_007913673.1 375997..376401(+) (pilG) [Pseudomonas sp. VD-NE white]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTCATCGACGACTCGAAAACGATTCGTCGCACCGCCGAAACCTTGTT
GAAGAATGTCGGGTGCGAAGTGATCACGGCGATCGACGGTTTCGACGCCCTGGCGAAGATCGCCGACAACCATCCCGGGA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCATTCAAG
GCCACGCCGGTGATCATGCTGTCATCCCGTGACGGGCTGTTCGACAAGGCCAAGGGACGGATTGTCGGTTCTGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCAACGCGATTCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701