Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RMV17_RS27685 Genome accession   NZ_CP134772
Coordinates   6198729..6199133 (-) Length   134 a.a.
NCBI ID   WP_007913673.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE ins     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6193729..6204133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV17_RS27670 - 6195550..6197598 (-) 2049 WP_034153650.1 methyl-accepting chemotaxis protein -
  RMV17_RS27675 - 6197753..6198292 (-) 540 WP_311884008.1 chemotaxis protein CheW -
  RMV17_RS27680 pilH 6198303..6198668 (-) 366 WP_026000666.1 twitching motility response regulator PilH -
  RMV17_RS27685 pilG 6198729..6199133 (-) 405 WP_007913673.1 twitching motility response regulator PilG Regulator
  RMV17_RS27690 gshB 6199359..6200330 (+) 972 WP_311884013.1 glutathione synthase -
  RMV17_RS27695 - 6200438..6201337 (+) 900 WP_038358807.1 energy transducer TonB -
  RMV17_RS27700 - 6201497..6202069 (+) 573 WP_016985971.1 YqgE/AlgH family protein -
  RMV17_RS27705 ruvX 6202069..6202506 (+) 438 WP_064589634.1 Holliday junction resolvase RuvX -
  RMV17_RS27710 pyrR 6202587..6203093 (+) 507 WP_016985973.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RMV17_RS27715 - 6203121..6204125 (+) 1005 WP_007913665.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14592.99 Da        Isoelectric Point: 7.1346

>NTDB_id=883486 RMV17_RS27685 WP_007913673.1 6198729..6199133(-) (pilG) [Pseudomonas sp. VD-NE ins]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=883486 RMV17_RS27685 WP_007913673.1 6198729..6199133(-) (pilG) [Pseudomonas sp. VD-NE ins]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTCATCGACGACTCGAAAACGATTCGTCGCACCGCCGAAACCTTGTT
GAAGAATGTCGGGTGCGAAGTGATCACGGCGATCGACGGTTTCGACGCCCTGGCGAAGATCGCCGACAACCATCCCGGGA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCATTCAAG
GCCACGCCGGTGATCATGCTGTCATCCCGTGACGGGCTGTTCGACAAGGCCAAGGGACGGATTGTCGGTTCTGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCAACGCGATTCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701